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PI0012519 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012519
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr04:28804367..28805744
RNA-Seq ExpressionPI0012519
SyntenyPI0012519
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-4170Show/hide
Query:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC
        SHPAAKGLLHKSFPYYDDLSYVFG D ATGA SETFAD GSNV N FND + LGDS+++DILT+YSQGV MS DE+ G RAG++SE RN SSGSK K+G 
Subjt:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC

Query:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK
        +HYE VEVI ++ EF NDQLK  +   K K
Subjt:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]7.3e-4272.44Show/hide
Query:  AAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHY
        A K LLHKSFPYYDDL YVFGKDRAT ARSETFADVGSNVPN FN  + L DS+D+DI  MYSQGV MSPDEM G RAG++SE +NCSSGSK KQG +HY
Subjt:  AAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHY

Query:  ETVEVIKNSMEFANDQLKNSSRLVKRK
        ETVEVIK+++EF NDQLK  +   K K
Subjt:  ETVEVIKNSMEFANDQLKNSSRLVKRK

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-4473.08Show/hide
Query:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC
        SHP  KGLL+KSFPYYDD+SYVFGKD+AT ARSETFADVGSN+PN FND + LGDS+ EDI TMYSQGV MS DEM GTRAG++SE RNCSS SK KQG 
Subjt:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC

Query:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK
        QHYETVEVI+++M+F NDQLK  +  +K K
Subjt:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.5e-4465.56Show/hide
Query:  MKHSSIRN-------------SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGT
        MKHSS+RN             SHPAAKGLLHKSFPYYDDLSYVFGKDRAT  RSETF+ VGSNVPN FND + LGDS+++DI  MYSQGV MS DEM G 
Subjt:  MKHSSIRN-------------SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGT

Query:  RAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQLKNSSRLVKRK
        RAG++SE RNCSSGSK K+G +HYE VEVI++ M+F N+QLK  +   K+K
Subjt:  RAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQLKNSSRLVKRK

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]5.4e-4575.38Show/hide
Query:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC
        SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF +VGSNV N FND+I LGDS+DEDI TMYSQGV MSPDEM G RAG++SE RNCSS SK K+G 
Subjt:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC

Query:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK
        + YETVEVI++ MEF N+QLK  +   K K
Subjt:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.6e-4575.38Show/hide
Query:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC
        SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF +VGSNV N FND+I LGDS+DEDI TMYSQGV MSPDEM G RAG++SE RNCSS SK K+G 
Subjt:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC

Query:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK
        + YETVEVI++ MEF N+QLK  +   K K
Subjt:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK

A0A5A7SQU2 Putative nuclease HARBI13.5e-4272.44Show/hide
Query:  AAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHY
        A K LLHKSFPYYDDL YVFGKDRAT ARSETFADVGSNVPN FN  + L DS+D+DI  MYSQGV MSPDEM G RAG++SE +NCSSGSK KQG +HY
Subjt:  AAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHY

Query:  ETVEVIKNSMEFANDQLKNSSRLVKRK
        ETVEVIK+++EF NDQLK  +   K K
Subjt:  ETVEVIKNSMEFANDQLKNSSRLVKRK

A0A5A7U0H7 Retrotransposon protein2.6e-4575.38Show/hide
Query:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC
        SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF +VGSNV N FND+I LGDS+DEDI TMYSQGV MSPDEM G RAG++SE RNCSS SK K+G 
Subjt:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC

Query:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK
        + YETVEVI++ MEF N+QLK  +   K K
Subjt:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK

A0A5A7USN6 Putative nuclease HARBI11.7e-4465.56Show/hide
Query:  MKHSSIRN-------------SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGT
        MKHSS+RN             SHPAAKGLLHKSFPYYDDLSYVFGKDRAT  RSETF+ VGSNVPN FND + LGDS+++DI  MYSQGV MS DEM G 
Subjt:  MKHSSIRN-------------SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGT

Query:  RAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQLKNSSRLVKRK
        RAG++SE RNCSSGSK K+G +HYE VEVI++ M+F N+QLK  +   K+K
Subjt:  RAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQLKNSSRLVKRK

A0A5D3CVB7 Retrotransposon protein1.7e-4473.08Show/hide
Query:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC
        SHP  KGLL+KSFPYYDD+SYVFGKD+AT ARSETFADVGSN+PN FND + LGDS+ EDI TMYSQGV MS DEM GTRAG++SE RNCSS SK KQG 
Subjt:  SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGC

Query:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK
        QHYETVEVI+++M+F NDQLK  +  +K K
Subjt:  QHYETVEVIKNSMEFANDQLKNSSRLVKRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACATTCTTCGATACGGAATAGTCATCCTGCAGCCAAAGGACTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTTGGCAAAGATCGGGCAAC
GGGAGCACGTTCAGAGACCTTTGCTGATGTGGGATCTAATGTGCCAAACAATTTTAATGACAGTATTTCCCTTGGTGATTCATATGATGAAGATATCCTGACGATGTATA
GCCAAGGAGTGGATATGTCACCAGATGAGATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGATAAAACAGGGTTGCCAACAT
TATGAAACAGTAGAGGTGATCAAGAATTCAATGGAATTTGCAAATGATCAATTAAAAAACAGTAGCAGATTGGTCAAAAGAAAAACGTGCAACAGAGGTCGAATTGCGTG
A
mRNA sequenceShow/hide mRNA sequence
ATGAAACATTCTTCGATACGGAATAGTCATCCTGCAGCCAAAGGACTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTTGGCAAAGATCGGGCAAC
GGGAGCACGTTCAGAGACCTTTGCTGATGTGGGATCTAATGTGCCAAACAATTTTAATGACAGTATTTCCCTTGGTGATTCATATGATGAAGATATCCTGACGATGTATA
GCCAAGGAGTGGATATGTCACCAGATGAGATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGATAAAACAGGGTTGCCAACAT
TATGAAACAGTAGAGGTGATCAAGAATTCAATGGAATTTGCAAATGATCAATTAAAAAACAGTAGCAGATTGGTCAAAAGAAAAACGTGCAACAGAGGTCGAATTGCGTG
A
Protein sequenceShow/hide protein sequence
MKHSSIRNSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQH
YETVEVIKNSMEFANDQLKNSSRLVKRKTCNRGRIA