CuGenDBv2

Gene ID	PI0012520
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr01:14046238..14047051
RNA-Seq Expression	PI0012520
Synteny	PI0012520
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]

2.6e-70

55.51

Show/hide

Query:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------
        M +SSR PKH WTKEE++ L+ECLVELV+ GGWRSDNGTFRP Y + L +M+A ++P  NI A+TID RIK MK  F  ++EM+GP CSG          
Subjt:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------

Query:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL
                   HPAAKGLLNK F HYD+L YVFG+ RATGGRAE+F D+GSN PPG++  A     D + P MY+ GL+MSPDD+M  R+ R+SE R   
Subjt:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL

Query:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL
        SGSKRKR G A ++  I+R+A+EY N+QL  IAEWP  Q QDA+ TR E+VR L
Subjt:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]

1.6e-70

55.51

Show/hide

Query:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------
        M +SSR PKH WTKEE++ L+ECLVELV+ GGWRSDNGTFRP Y + L +M+A ++P  NI A+TID RIK MK  F  ++EM+GP CSG          
Subjt:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------

Query:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL
                   HPAAKGLLNK F HYD+L YVFG+ RATGGRAE+F D+GSN PPG++  A     D + P MY+ GL+MSPDD+M  R+ R+SE R   
Subjt:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL

Query:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL
        SGSKRKR G A ++  I+R+A+EY N+QL  IAEWP  Q QDA+ TR E+VR L
Subjt:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]

2.6e-70

55.51

Show/hide

Query:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------
        M +SSR PKH WTKEE++ L+ECLVELV+ GGWRSDNGTFRP Y + L +M+A ++P  NI A+TID RIK MK  F  ++EM+GP CSG          
Subjt:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------

Query:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL
                   HPAAKGLLNK F HYD+L YVFG+ RATGGRAE+F D+GSN PPG++  A     D + P MY+ GL+MSPDD+M  R+ R+SE R   
Subjt:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL

Query:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL
        SGSKRKR G A ++  I+R+A+EY N+QL  IAEWP  Q QDA+ TR E+VR L
Subjt:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL

KAA0048377.1 retrotransposon protein [Cucumis melo var. makuwa]

2.6e-70

55.51

Show/hide

Query:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------
        M +SSR PKH WTKEE++ L+ECLVELV+ GGWRSDNGTFRP Y + L +M+A ++P  NI A+TID RIK MK  F  ++EM+GP CSG          
Subjt:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------

Query:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL
                   HPAAKGLLNK F HYD+L YVFG+ RATGGRAE+F D+GSN PPG++  A     D + P MY+ GL+MSPDD+M  R+ R+SE R   
Subjt:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL

Query:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL
        SGSKRKR G A ++  I+R+A+EY N+QL  IAEWP  Q QDA+ TR E+VR L
Subjt:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]

9.1e-71

55.86

Show/hide

Query:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------
        M +SSR PKH WTKEE++ L+ECLVELV+ GGWRSDNGTFRP Y + L +M+A ++P  NI A+TID RIK MK  F  ++EM+GP CSG          
Subjt:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------

Query:  -------------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARP
                     HPAAKGLLNK F HYD+L YVFG+ RATGGRAE+F D+GSN PPG++  A     D + P MY+ GL+MSPDD+M  R+ R+SE R 
Subjt:  -------------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARP

Query:  GLSGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL
          SGSKRKR G A ++  I+R+A+EY N+QL  IAEWP  Q QDAS TR E+VRQL
Subjt:  GLSGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2A6 Retrotransposon protein

1.3e-70

55.51

Show/hide

Query:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------
        M +SSR PKH WTKEE++ L+ECLVELV+ GGWRSDNGTFRP Y + L +M+A ++P  NI A+TID RIK MK  F  ++EM+GP CSG          
Subjt:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------

Query:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL
                   HPAAKGLLNK F HYD+L YVFG+ RATGGRAE+F D+GSN PPG++  A     D + P MY+ GL+MSPDD+M  R+ R+SE R   
Subjt:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL

Query:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL
        SGSKRKR G A ++  I+R+A+EY N+QL  IAEWP  Q QDA+ TR E+VR L
Subjt:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL

A0A5A7UME4 Retrotransposon protein

1.3e-70

55.51

Show/hide

Query:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------
        M +SSR PKH WTKEE++ L+ECLVELV+ GGWRSDNGTFRP Y + L +M+A ++P  NI A+TID RIK MK  F  ++EM+GP CSG          
Subjt:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------

Query:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL
                   HPAAKGLLNK F HYD+L YVFG+ RATGGRAE+F D+GSN PPG++  A     D + P MY+ GL+MSPDD+M  R+ R+SE R   
Subjt:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL

Query:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL
        SGSKRKR G A ++  I+R+A+EY N+QL  IAEWP  Q QDA+ TR E+VR L
Subjt:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL

A0A5D3C1M0 Retrotransposon protein

4.4e-71

55.86

Show/hide

Query:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------
        M +SSR PKH WTKEE++ L+ECLVELV+ GGWRSDNGTFRP Y + L +M+A ++P  NI A+TID RIK MK  F  ++EM+GP CSG          
Subjt:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------

Query:  -------------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARP
                     HPAAKGLLNK F HYD+L YVFG+ RATGGRAE+F D+GSN PPG++  A     D + P MY+ GL+MSPDD+M  R+ R+SE R 
Subjt:  -------------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARP

Query:  GLSGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL
          SGSKRKR G A ++  I+R+A+EY N+QL  IAEWP  Q QDAS TR E+VRQL
Subjt:  GLSGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL

A0A5D3CBF7 Retrotransposon protein

1.3e-70

55.51

Show/hide

Query:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------
        M +SSR PKH WTKEE++ L+ECLVELV+ GGWRSDNGTFRP Y + L +M+A ++P  NI A+TID RIK MK  F  ++EM+GP CSG          
Subjt:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------

Query:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL
                   HPAAKGLLNK F HYD+L YVFG+ RATGGRAE+F D+GSN PPG++  A     D + P MY+ GL+MSPDD+M  R+ R+SE R   
Subjt:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL

Query:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL
        SGSKRKR G A ++  I+R+A+EY N+QL  IAEWP  Q QDA+ TR E+VR L
Subjt:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL

A0A5D3DPR5 Retrotransposon protein

7.5e-71

55.51

Show/hide

Query:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------
        M +SSR PKH WTKEE++ L+ECLVELV+ GGWRSDNGTFRP Y + L +M+A ++P  NI A+TID RIK MK  F  ++EM+GP CSG          
Subjt:  MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSG----------

Query:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL
                   HPAAKGLLNK F HYD+L YVFG+ RATGGRAE+F D+GSN PPG++  A     D + P MY+ GL+MSPDD+M  R+ R+SE R   
Subjt:  -----------HPAAKGLLNKPFPHYDDLCYVFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGL

Query:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL
        SGSKRKR G A ++  I+R+A+EY N+QL  IAEWP  Q QDA+ TR E+VR L
Subjt:  SGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQDASVTRAEVVRQL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G27260.1 unknown protein

1.2e-04

25.35

Show/hide

Query:  WTKEEDSVLIECLVELVSFGGWRSDNGT---------FRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQ----------------------VI
        W+ EE  +L++ LVE ++   WR  NGT         F P+ +   K+    +   H ++      R+K +KI +Q                        
Subjt:  WTKEEDSVLIECLVELVSFGGWRSDNGT---------FRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQ----------------------VI

Query:  SEMKGPTCSGHPAAKGLLNKPFPHYDDLCYVFGRGRATGGRA
         E+       HP  K L    F  +D+L  +FG G ATG  A
Subjt:  SEMKGPTCSGHPAAKGLLNKPFPHYDDLCYVFGRGRATGGRA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTAACGTCTTCAAGGGCCCCGAAGCACCACTGGACGAAAGAGGAGGATTCCGTCCTCATTGAATGTCTGGTGGAGTTGGTATCTTTCGGCGGGTGGAGGTCGGATAA
CGGGACTTTTAGACCCGATTACCATAGTCATCTAAAGAAAATGATTGCCGAGAGGATGCCCGAACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACAATGA
AAATAGCATTCCAAGTGATATCTGAGATGAAGGGTCCGACGTGTAGTGGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTAC
GTGTTCGGAAGAGGTCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGCGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGATTTGCCCACTACAACGGAAACGATAT
GGAGAACCCGACGATGTACAATCAGGGCTTGGACATGTCACCTGACGACATAATGACTCCACGATCAGTTCGTATGTCTGAGGCTAGGCCTGGTTTGAGCGGGTCGAAGA
GGAAACGGGGAGGGCAGGCATTGGAGGCGGCAAAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGCCATTGCAGAATGGCCCAAAGAACAATGGCAA
GATGCAAGCGTGACACGTGCGGAAGTCGTTAGACAGCTATAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MVTSSRAPKHHWTKEEDSVLIECLVELVSFGGWRSDNGTFRPDYHSHLKKMIAERMPEHNITATTIDCRIKTMKIAFQVISEMKGPTCSGHPAAKGLLNKPFPHYDDLCY
VFGRGRATGGRAETFGDVGSNVPPGFEGFAHYNGNDMENPTMYNQGLDMSPDDIMTPRSVRMSEARPGLSGSKRKRGGQALEAAKIIRSAMEYANDQLKAIAEWPKEQWQ
DASVTRAEVVRQL

PI0012520 (gene) of Melon (PI 482460) v1 genome