; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0012530 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012530
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein L16, chloroplastic
Genome locationtig00003626:1021816..1022124
RNA-Seq ExpressionPI0012530
SyntenyPI0012530
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABI97454.1 ribosomal protein L16, partial [Cucumis sativus]1.5e-4998Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

ASY96370.1 ribosomal protein L16 [Cucumis melo subsp. agrestis]1.5e-4998Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

QHB76001.1 ribosomal protein L16 [Cucumis melo subsp. melo]6.6e-5099Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

YP_004841821.1 ribosomal protein L16 [Cucumis melo subsp. melo]1.5e-4998Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

YP_009317423.1 ribosomal protein L16 [Coccinia grandis]2.5e-4998Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

TrEMBL top hitse value%identityAlignment
A0A1S4EU42 50S ribosomal protein L16, chloroplastic7.1e-5098Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

A0A1X9Q1F7 50S ribosomal protein L16, chloroplastic (Fragment)7.1e-5098Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

A0A218KG73 50S ribosomal protein L16, chloroplastic7.1e-5098Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

A0A249S030 50S ribosomal protein L16, chloroplastic7.1e-5098Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

A0A6B9M9R9 50S ribosomal protein L16, chloroplastic3.2e-5099Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

SwissProt top hitse value%identityAlignment
A0ZZ72 50S ribosomal protein L16, chloroplastic8.1e-5194Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

B2XWR1 50S ribosomal protein L16, chloroplastic8.1e-5194Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGK+WVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEISGV EKIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

Q09ME0 50S ribosomal protein L16, chloroplastic3.6e-5195Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

Q2L940 50S ribosomal protein L16, chloroplastic8.1e-5194Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

Q4VZN1 50S ribosomal protein L16, chloroplastic1.9e-5298Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAE IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 124.1e-3469.7Show/hide
Query:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+RP ETRMG GKG+P +WVAVVKPG+I+YE+ GV+EK+AR+
Subjt:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

ATCG00790.1 ribosomal protein L163.9e-4887Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK
        +KGIS RGN ICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILYE+ GV E IARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARK

ATMG00080.1 ribosomal protein L161.1e-1842.99Show/hide
Query:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGV
        +G    G  + FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F D P+T +PTE RMG GKG+P  W+A V  G+I +E+ GV
Subjt:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGV

Query:  AEKIARK
        +   AR+
Subjt:  AEKIARK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCCGGACGAAGGGC
AATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCC
CCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATAAGTGGAGTAGCCGAAAAAATAGCCAGAAAATTTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCCGGACGAAGGGC
AATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCC
CCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATAAGTGGAGTAGCCGAAAAAATAGCCAGAAAATTTCAATAG
Protein sequenceShow/hide protein sequence
MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAEKIARKFQ