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PI0012542 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012542
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr08:3678111..3678569
RNA-Seq ExpressionPI0012542
SyntenyPI0012542
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]5.6e-4564.05Show/hide
Query:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE
        MS EE   SP +QVIEG VTRGRKEQHSPTRRSKSKGP  RE+VDTRLTNLEQG++DVQ +VGRLS+NF+ELVQENAEIT  AKE++ED+GR F++EL E
Subjt:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE

Query:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP
        +AS   TLK+ +EGEL  LHTK  + + ++D +C  CRSKH+   + ST   P
Subjt:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP

KAA0040659.1 uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]1.2e-4464.05Show/hide
Query:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE
        MS EE   SP +QVIEG VTRGRKEQHSPTRRSKSKGP  RE+VDTRLTNLEQG++DVQ +VGRLS+ F+ELVQENAEIT  AKE++ED+GR F+KEL E
Subjt:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE

Query:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP
        +AS   TLK+ +EGEL +LHTK  + + ++D +C  CRSKH+   + ST   P
Subjt:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP

KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]9.5e-4563.4Show/hide
Query:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE
        MS EE   SP +QVIEG VTRGRK+QHSPTRRSKSKGPT RE+VDTRLTNLE+G++DVQ +VGRLS+NF+ELVQENAEIT  AKE++ED+GR F+KEL E
Subjt:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE

Query:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP
        +AS   TLK+ +EGEL +LHTK  + + ++D +C  C SKH+   + ST   P
Subjt:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]1.6e-4463.4Show/hide
Query:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE
        MS EE   SP +QVIEG VTRGRKEQHSPTRRSKSKGP  RE+VDTRLTNLEQG++DVQ +VGRLS+NF+ELVQENAEIT  AKE++ED+GR F++EL E
Subjt:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE

Query:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP
        + S   TLK+ +EGEL  LHTK  + + ++D +C  CRSKH+   + ST   P
Subjt:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP

TYK18079.1 uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa]9.5e-4563.4Show/hide
Query:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE
        MS EE   SP +QVIEG VTRGRK+QHSPTRRSKSKGPT RE+VDTRLTNLE+G++DVQ +VGRLS+NF+ELVQENAEIT  AKE++ED+GR F+KEL E
Subjt:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE

Query:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP
        +AS   TLK+ +EGEL +LHTK  + + ++D +C  C SKH+   + ST   P
Subjt:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP

TrEMBL top hitse value%identityAlignment
A0A5A7TAA5 Uncharacterized protein2.7e-4564.05Show/hide
Query:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE
        MS EE   SP +QVIEG VTRGRKEQHSPTRRSKSKGP  RE+VDTRLTNLEQG++DVQ +VGRLS+NF+ELVQENAEIT  AKE++ED+GR F++EL E
Subjt:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE

Query:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP
        +AS   TLK+ +EGEL  LHTK  + + ++D +C  CRSKH+   + ST   P
Subjt:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP

A0A5A7TFP3 Retrotrans_gag domain-containing protein4.6e-4563.4Show/hide
Query:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE
        MS EE   SP +QVIEG VTRGRK+QHSPTRRSKSKGPT RE+VDTRLTNLE+G++DVQ +VGRLS+NF+ELVQENAEIT  AKE++ED+GR F+KEL E
Subjt:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE

Query:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP
        +AS   TLK+ +EGEL +LHTK  + + ++D +C  C SKH+   + ST   P
Subjt:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP

A0A5A7THC0 Reverse transcriptase domain-containing protein6.0e-4564.05Show/hide
Query:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE
        MS EE   SP +QVIEG VTRGRKEQHSPTRRSKSKGP  RE+VDTRLTNLEQG++DVQ +VGRLS+ F+ELVQENAEIT  AKE++ED+GR F+KEL E
Subjt:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE

Query:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP
        +AS   TLK+ +EGEL +LHTK  + + ++D +C  CRSKH+   + ST   P
Subjt:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP

A0A5A7VEX8 Polyprotein7.9e-4563.4Show/hide
Query:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE
        MS EE   SP +QVIEG VTRGRKEQHSPTRRSKSKGP  RE+VDTRLTNLEQG++DVQ +VGRLS+NF+ELVQENAEIT  AKE++ED+GR F++EL E
Subjt:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE

Query:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP
        + S   TLK+ +EGEL  LHTK  + + ++D +C  CRSKH+   + ST   P
Subjt:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP

A0A5D3D3V4 Retrotrans_gag domain-containing protein4.6e-4563.4Show/hide
Query:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE
        MS EE   SP +QVIEG VTRGRK+QHSPTRRSKSKGPT RE+VDTRLTNLE+G++DVQ +VGRLS+NF+ELVQENAEIT  AKE++ED+GR F+KEL E
Subjt:  MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNE

Query:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP
        +AS   TLK+ +EGEL +LHTK  + + ++D +C  C SKH+   + ST   P
Subjt:  VAS---TLKSVIEGELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACTGAGGAAAATCCCATATCACCAGAGAAGCAAGTCATTGAAGGACTCGTTACTCGGGGAAGGAAGGAACAACACTCTCCAACCCGACGCTCTAAGTCTAAAGG
ACCGACGACAAGAGAGTACGTCGACACTCGCCTTACCAACCTAGAGCAGGGCCTGAAGGATGTTCAGTTCTCGGTTGGTAGGCTGAGTGATAACTTTGACGAGTTAGTCC
AGGAAAATGCCGAAATTACCATCACTGCCAAGGAGCTCGTTGAGGATCTTGGACGACCGTTCAGAAAGGAACTAAACGAAGTGGCATCGACATTAAAGTCCGTCATTGAA
GGTGAGTTACGTGAGCTCCATACTAAATACAACACTCTTGATGGCAAGATAGACTTTGTTTGTTCCATATGTCGTTCTAAACATGTTACCGGTGCAAGCACTTCGACCGG
TAACCAACCTGCTGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACTGAGGAAAATCCCATATCACCAGAGAAGCAAGTCATTGAAGGACTCGTTACTCGGGGAAGGAAGGAACAACACTCTCCAACCCGACGCTCTAAGTCTAAAGG
ACCGACGACAAGAGAGTACGTCGACACTCGCCTTACCAACCTAGAGCAGGGCCTGAAGGATGTTCAGTTCTCGGTTGGTAGGCTGAGTGATAACTTTGACGAGTTAGTCC
AGGAAAATGCCGAAATTACCATCACTGCCAAGGAGCTCGTTGAGGATCTTGGACGACCGTTCAGAAAGGAACTAAACGAAGTGGCATCGACATTAAAGTCCGTCATTGAA
GGTGAGTTACGTGAGCTCCATACTAAATACAACACTCTTGATGGCAAGATAGACTTTGTTTGTTCCATATGTCGTTCTAAACATGTTACCGGTGCAAGCACTTCGACCGG
TAACCAACCTGCTGCGTAA
Protein sequenceShow/hide protein sequence
MSTEENPISPEKQVIEGLVTRGRKEQHSPTRRSKSKGPTTREYVDTRLTNLEQGLKDVQFSVGRLSDNFDELVQENAEITITAKELVEDLGRPFRKELNEVASTLKSVIE
GELRELHTKYNTLDGKIDFVCSICRSKHVTGASTSTGNQPAA