CuGenDBv2

Gene ID	PI0012597
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr06:12394897..12395442
RNA-Seq Expression	PI0012597
Synteny	PI0012597
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016020 - membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]

1.5e-68

70.17

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Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV
        MEEFDLAIR+ADLVEP+VQGNWFTWTSKV+GSG L RLDR+LVN++ L AWP++ + VLPWGISDHSPILFYP+ +   R++SF FFNHWVE+ SF +VV
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV

Query:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR
        + +W R  GVSLLVSLMRNLH LKP+LRR FGRHI+ LSEEV  AKEAMD AQREVE++P S   SR AS+AT+ FW A+R
Subjt:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR

KAA0059841.1 reverse transcriptase [Cucumis melo var. makuwa]

2.4e-66

68.51

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Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV
        ME+FDLAIR+ADLVEP+VQGNWFTWTSKV GSG L RLDR+LVN+  L AWP++ V VLPWGISDHSPILFYP+ +   +++SF FFNHWVED SF +VV
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV

Query:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR
        + +W R  GVS LVSLMRNLH LKP LRR FGRHI+ LSEEV  AKEAMD+AQR+VE++  S   SR AS+AT+ FW A+R
Subjt:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR

XP_004152987.1 uncharacterized protein LOC101213320 [Cucumis sativus]

1.5e-60

64.41

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Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV
        MEEFD+AI EADLVEP+VQ NWFTWTSK+ GSG + RLDRILVN++GL AWP++ V VLPWGISDHS IL YP+ +  +R++SF FFNHWVED+SF DVV
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV

Query:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFW
        SS+W R   VS +VS ++NL +LKP+LR HF +HI+ +SE+VR AK+ MD+AQREVE +P S E S  AS+AT  FW
Subjt:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFW

XP_008466769.1 PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo]

2.4e-66

68.51

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Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV
        ME+FDLAIR+ADLVEP+VQGNWFTWTSKV GSG L RLDR+LVN+  L AWP++ V VLPWGISDHSPILFYP+ +   +++SF FFNHWVED SF +VV
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV

Query:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR
        + +W R  GVS LVSLMRNLH LKP LRR FGRHI+ LSEEV  AKEAMD+AQR+VE++  S   SR AS+AT+ FW A+R
Subjt:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR

XP_031740408.1 uncharacterized protein LOC116403413 [Cucumis sativus]

5.1e-61

62.43

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Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV
        MEEFD+AIREADLVE AVQGNWFTWTSK+ GSG + RLDRILVN++GL  WP++ V VLPWGISDHSPIL YP+ ++ ++++SF FFNHWV++ SF DVV
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV

Query:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR
        SS W +   VS +V+++RNL +LK +LRRHFGRHIR +SE+VR A + MD+A+RE+E +  S E S  AS+AT  FW A+R
Subjt:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CRZ6 uncharacterized protein LOC103504100

1.1e-66

68.51

Show/hide

Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV
        ME+FDLAIR+ADLVEP+VQGNWFTWTSKV GSG L RLDR+LVN+  L AWP++ V VLPWGISDHSPILFYP+ +   +++SF FFNHWVED SF +VV
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV

Query:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR
        + +W R  GVS LVSLMRNLH LKP LRR FGRHI+ LSEEV  AKEAMD+AQR+VE++  S   SR AS+AT+ FW A+R
Subjt:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR

A0A5A7SPE5 Reverse transcriptase domain-containing protein

5.7e-58

69.23

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Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV
        ME+F+LAIR+ADLVEP+VQGNWFTWTSKV+GSG L RLDR+LVN+  L  WP++ V VLPWGISDH PILFYP+ +   +++SF FFNHWVED SF +VV
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV

Query:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREV
        + +W R  GVS LV LMRNLH LKP+LRR FGRHI+ LSEEVR  KEAMD AQRE+
Subjt:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREV

A0A5A7TZS0 Reverse transcriptase domain-containing protein

7.1e-69

70.17

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Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV
        MEEFDLAIR+ADLVEP+VQGNWFTWTSKV+GSG L RLDR+LVN++ L AWP++ + VLPWGISDHSPILFYP+ +   R++SF FFNHWVE+ SF +VV
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV

Query:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR
        + +W R  GVSLLVSLMRNLH LKP+LRR FGRHI+ LSEEV  AKEAMD AQREVE++P S   SR AS+AT+ FW A+R
Subjt:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR

A0A5A7V275 Reverse transcriptase

1.1e-66

68.51

Show/hide

Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV
        ME+FDLAIR+ADLVEP+VQGNWFTWTSKV GSG L RLDR+LVN+  L AWP++ V VLPWGISDHSPILFYP+ +   +++SF FFNHWVED SF +VV
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV

Query:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR
        + +W R  GVS LVSLMRNLH LKP LRR FGRHI+ LSEEV  AKEAMD+AQR+VE++  S   SR AS+AT+ FW A+R
Subjt:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR

A0A5D3DXE4 Reverse transcriptase domain-containing protein

5.7e-58

69.23

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Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV
        ME+F+LAIR+ADLVEP+VQGNWFTWTSKV+GSG L RLDR+LVN+  L  WP++ V VLPWGISDH PILFYP+ +   +++SF FFNHWVED SF +VV
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVV

Query:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREV
        + +W R  GVS LV LMRNLH LKP+LRR FGRHI+ LSEEVR  KEAMD AQRE+
Subjt:  SSVWMRRLGVSLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G40390.1 DNAse I-like superfamily protein

2.0e-07

25.69

Show/hide

Query:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFY----PAVEQQRRIISFHFFNHWVEDTSF
        +E+    +R++DLV+   +G  +TW++  + +  L +LDR +VN   L  +P+      P   SDH+  +      P + +++   SF +F+       F
Subjt:  MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFY----PAVEQQRRIISFHFFNHWVEDTSF

Query:  SDVVSSVWMRRLGV-SLLVSLMRNLHDLKPVLRRHFGRHIRGLS
           + + W + + V S + SL   L + K   R   G + RG S
Subjt:  SDVVSSVWMRRLGV-SLLVSLMRNLHDLKPVLRRHFGRHIRGLS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGAATTTGATCTTGCTATTCGCGAGGCTGACTTGGTTGAGCCAGCTGTTCAGGGAAACTGGTTCACTTGGACCAGCAAGGTGCGAGGTTCAGGTCGGTTGCATCG
GCTTGATCGTATTTTGGTTAATGAGCAAGGGTTAATGGCTTGGCCTAGTCTGTGTGTTACTGTTTTGCCTTGGGGAATTTCTGACCATTCCCCTATATTATTCTATCCTG
CTGTTGAGCAGCAGAGGCGTATTATTTCGTTTCATTTCTTTAATCATTGGGTGGAGGATACGTCTTTCAGTGATGTGGTGTCTTCAGTTTGGATGAGAAGGTTGGGTGTG
TCTCTGTTAGTGAGTCTTATGCGGAATTTGCATGATTTGAAACCTGTGCTTCGTAGACATTTTGGTAGACATATCAGGGGCCTTAGTGAGGAGGTGCGCTCGGCAAAAGA
GGCTATGGATAAGGCCCAGAGAGAGGTTGAGCAGGATCCTGGGTCTGTGGAGAGGAGTCGTGATGCGAGTGTTGCAACTGATGCCTTTTGGTTAGCTATCCGTTAG

mRNA sequence

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Protein sequence

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MEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLHRLDRILVNEQGLMAWPSLCVTVLPWGISDHSPILFYPAVEQQRRIISFHFFNHWVEDTSFSDVVSSVWMRRLGV
SLLVSLMRNLHDLKPVLRRHFGRHIRGLSEEVRSAKEAMDKAQREVEQDPGSVERSRDASVATDAFWLAIR

PI0012597 (gene) of Melon (PI 482460) v1 genome