CuGenDBv2

Gene ID	PI0012610
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Genome location	chr01:11573447..11573995
RNA-Seq Expression	PI0012610
Synteny	PI0012610
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0056622.1 uncharacterized protein E6C27_scaffold288G001420 [Cucumis melo var. makuwa]

6.4e-80

79.12

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Query:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE
        MTY ELLPQLIQNRQLAPIPMIPIQPPY KWYDSNARCDYHAGG GHSTENCLALKRN+QSLIN  WLSFKK  EKP+ N+NPLP+HEN KVN VD   E
Subjt:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE

Query:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ
        +CK EVHEI MPMEALFE LF+ GYVS EY+DPNIRYEGYD+S++C+FHQGV GHVVQ C  FR KVQQL D+KILT+Y+GQ
Subjt:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

KAA0060421.1 uncharacterized protein E6C27_scaffold22G002400 [Cucumis melo var. makuwa]

1.4e-82

81.32

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Query:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE
        MTY ELLPQLIQNRQLAPIPMIPIQPPY KWYDSNARCDYHAGG GHSTENC ALKRN+QSLINA WLSFKK+ EKP+ N+NPLPNHEN KVN VD   E
Subjt:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE

Query:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ
        +CK EVHEI MPMEALFE+LFE GYVS EYLDPNIRYEGYD+S++C+FHQGV GHVVQ C  FR KVQQLMD+KILT+Y+GQ
Subjt:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

XP_031737539.1 uncharacterized protein LOC116402431 [Cucumis sativus]

6.4e-80

78.57

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Query:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE
        MTY ELLPQL+ NRQLAPIP+ PIQPPY KWYD NARCDYHAGG GHSTENCLALKR +QSLINA WLSFKKA EKPD N+NPLPNHENSKVN +D F  
Subjt:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE

Query:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ
        +CK EVHEIRMPME LFE LFE GYVS EYLDPNIRYEGYD+ K C+FHQGV GH +Q C TFR KVQQ MD+KILT+Y+GQ
Subjt:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

XP_031737546.1 uncharacterized protein LOC116402435 [Cucumis sativus]

6.4e-80

78.57

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Query:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE
        MTY ELLPQL+ NRQLAPIP+ PIQPPY KWYD NARCDYHAGG GHSTENCLALKR +QSLINA WLSFKKA EKPD N+NPLPNHENSKVN +D F  
Subjt:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE

Query:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ
        +CK EVHEIRMPME LFE LFE GYVS EYLDPNIRYEGYD+ K C+FHQGV GH +Q C TFR KVQQ MD+KILT+Y+GQ
Subjt:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

XP_031737550.1 uncharacterized protein LOC116402440 [Cucumis sativus]

1.7e-80

79.12

Show/hide

Query:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE
        MTY ELLPQL+QNRQLAPIP+ PIQPPY KWYD NARCDYHAGG GHSTENCLALKR +QSLINA WLSFKKA EKPD N+NPLPNHENSKVN +D F  
Subjt:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE

Query:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ
        +CK EVHEIRMPME LFE LFE GYVS EYLDPNIRYEGYD+ K C+FHQGV GH +Q C TFR KVQQ MD+KILT+Y+GQ
Subjt:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0H8 Uncharacterized protein

7.6e-79

78.57

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Query:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE
        MTY ELLPQLIQNRQLA IPMIPIQPPY KWYDSNARCDYHAGG GHSTENCLALKRN+QSLINA WLSFKK+ EK +  +NPLP+HEN KVN VD   E
Subjt:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE

Query:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ
        +C+ EVHEI MPMEALFE LFE GYVS EYLDPNIRYEGYD+S++C+FH+GV GHVVQ C  FR KVQQLMD+KILT+Y+GQ
Subjt:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

A0A5A7T0R1 Uncharacterized protein

2.6e-79

79.12

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Query:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE
        MTY ELLPQLIQNRQLA IPMIPIQPPY KWYDSNAR DYHAGG GHSTENCLALKRN+QSLINARWLSFKK+ EK + N+NPLP+HEN KVN VD   E
Subjt:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE

Query:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ
        +CK EVHEI MPMEALFE LFE GYV  EYLDPNIRYEGYD+S++C+FH+GV GHVVQ C  FR KVQQLMD+KILT+Y+GQ
Subjt:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

A0A5A7TRL7 Ribonuclease H

9.0e-80

79.67

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Query:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE
        MTY ELLPQLIQNRQLAPIPMIPIQPPY KWYDSNAR DYHAGG GHSTENCLALKR +QSLINA WLSFKK+ EKP+ N+NPLP+HEN KVN VD   E
Subjt:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE

Query:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ
        +CK EVHEI MPMEALFE LFE  YVS EYLDPNIRYEGYD+S++C+FHQGV GHVVQ C  FR KVQQLMD+KILT+Y+GQ
Subjt:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

A0A5A7ULC1 Uncharacterized protein

3.1e-80

79.12

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Query:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE
        MTY ELLPQLIQNRQLAPIPMIPIQPPY KWYDSNARCDYHAGG GHSTENCLALKRN+QSLIN  WLSFKK  EKP+ N+NPLP+HEN KVN VD   E
Subjt:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE

Query:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ
        +CK EVHEI MPMEALFE LF+ GYVS EY+DPNIRYEGYD+S++C+FHQGV GHVVQ C  FR KVQQL D+KILT+Y+GQ
Subjt:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

A0A5A7V3W7 Retrotrans_gag domain-containing protein

6.7e-83

81.32

Show/hide

Query:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE
        MTY ELLPQLIQNRQLAPIPMIPIQPPY KWYDSNARCDYHAGG GHSTENC ALKRN+QSLINA WLSFKK+ EKP+ N+NPLPNHEN KVN VD   E
Subjt:  MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDE

Query:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ
        +CK EVHEI MPMEALFE+LFE GYVS EYLDPNIRYEGYD+S++C+FHQGV GHVVQ C  FR KVQQLMD+KILT+Y+GQ
Subjt:  ECKKEVHEIRMPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACCTATATAGAGCTTTTACCCCAACTAATTCAAAATCGACAATTAGCTCCTATTCCAATGATCCCTATACAACCTCCTTATCGAAAATGGTATGATTCAAATGCTCG
ATGTGATTATCATGCTGGAGGGGCAGGGCACTCAACTGAAAATTGTTTGGCTTTGAAAAGGAATATGCAATCTTTGATTAATGCTAGATGGTTAAGCTTTAAGAAAGCTA
GTGAGAAGCCAGATGCCAATGACAATCCACTCCCTAATCATGAAAATTCAAAGGTGAATGATGTGGATTTCTTTGACGAAGAGTGTAAAAAAGAGGTTCATGAGATAAGG
ATGCCCATGGAAGCACTTTTTGAAAATCTTTTTGAAGTAGGATATGTTAGTCAGGAATATTTAGACCCCAATATAAGATATGAAGGGTATGATAAAAGCAAATATTGTGT
ATTTCATCAAGGAGTTACAGGTCATGTTGTTCAACACTGCTACACGTTTAGATTTAAAGTACAACAACTTATGGATGCAAAGATACTCACGATATATAAAGGACAATGA

mRNA sequence

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Protein sequence

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MTYIELLPQLIQNRQLAPIPMIPIQPPYRKWYDSNARCDYHAGGAGHSTENCLALKRNMQSLINARWLSFKKASEKPDANDNPLPNHENSKVNDVDFFDEECKKEVHEIR
MPMEALFENLFEVGYVSQEYLDPNIRYEGYDKSKYCVFHQGVTGHVVQHCYTFRFKVQQLMDAKILTIYKGQ

PI0012610 (gene) of Melon (PI 482460) v1 genome