; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0012709 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012709
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationtig00003741:115536..115967
RNA-Seq ExpressionPI0012709
SyntenyPI0012709
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8091090.1 hypothetical protein N665_0454s0031, partial [Sinapis alba]4.0e-6188.73Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTE + VTLRDG+EEGRRF+NEE+DPMTSKELNEEPYE         SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

RWR98012.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]2.5e-6392.96Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]4.3e-7199.3Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]6.8e-6996.5Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        EHS VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]9.8e-6895.8Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLS+NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        E+ VVLVRG RVKDLP VRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic1.2e-6392.96Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A443Q5I9 30S ribosomal protein S12, chloroplastic9.6e-6189.44Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A6A5N1Q8 Uncharacterized protein7.4e-6190.14Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        H VVLVRGG VKDLPGVRYHIVRGTL A+GVKDRQQGRSSAL
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A6J1F0L1 uncharacterized protein LOC1114383942.1e-7199.3Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

U5CU38 Uncharacterized protein6.9e-5987.32Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +EN TELV VT RDG+EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic1.3e-4395.7Show/hide
Query:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        T + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

A4QJX7 30S ribosomal protein S12-B, chloroplastic2.2e-3891.86Show/hide
Query:  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

Q0G9J5 30S ribosomal protein S12, chloroplastic2.9e-3898.75Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q1KXY0 30S ribosomal protein S12, chloroplastic2.9e-3898.75Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q332V3 30S ribosomal protein S12, chloroplastic2.9e-3898.75Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein6.0e-2351.46Show/hide
Query:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
        EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++
Subjt:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ

Query:  GRS
        GRS
Subjt:  GRS

ATCG00065.1 ribosomal protein S12A1.3e-38100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG00905.1 ribosomal protein S12C1.3e-38100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG01230.1 ribosomal protein S12B1.3e-38100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATMG00980.1 Ribosomal protein S12/S23 family protein6.0e-2351.46Show/hide
Query:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
        EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++
Subjt:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ

Query:  GRS
        GRS
Subjt:  GRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAA
CGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCT
TACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGA
AGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAA
CGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCT
TACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGA
AGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG
Protein sequenceShow/hide protein sequence
MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG
RVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL