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PI0012780 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012780
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr04:21711923..21713077
RNA-Seq ExpressionPI0012780
SyntenyPI0012780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031700.1 hypothetical protein E6C27_scaffold139G004840 [Cucumis melo var. makuwa]2.9e-0846.91Show/hide
Query:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPL
        M+ P+G +PFPST+EAL L+ +P L    Q PI GS+ +Q +LN  ITLH +KE ER LK L     EE         SPL
Subjt:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPL

KAA0053237.1 hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa]1.3e-0846.99Show/hide
Query:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPLNL
        ME PKGA  FPS +E L+L+ +P L+++PQ  I   + NQT+LN +IT H +KE E  LK LGHE + E    + D   PL+L
Subjt:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPLNL

KAA0054434.1 hypothetical protein E6C27_scaffold24G001880 [Cucumis melo var. makuwa]8.1e-1137.59Show/hide
Query:  QTSLNHMITLHAHKEVERRLKMLGHEDKEEASP-RRADTLSPLNLSGPLAVHHPTRIPKDLSVSHTQLSTAVSTLISLVIAQSEMMRQMSVRHDRQFRAQ
        + +LN +IT H +KE E  LK LG +  +E     ++ T  PL  +    +  P    K L V  T    + S             + M  R DR+F+A 
Subjt:  QTSLNHMITLHAHKEVERRLKMLGHEDKEEASP-RRADTLSPLNLSGPLAVHHPTRIPKDLSVSHTQLSTAVSTLISLVIAQSEMMRQMSVRHDRQFRAQ

Query:  MEYTHVALVQRVPAPVIPTDLETPFPPLARL-GDPEPHQDN
        MEYTH   VQRVP PVIP +LETPFPP+ +  G P+P Q++
Subjt:  MEYTHVALVQRVPAPVIPTDLETPFPPLARL-GDPEPHQDN

TYJ97633.1 hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa]7.6e-0943.18Show/hide
Query:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPLNLSGPLA
        ME PKGA  FPS +E L+L+ +P L+++PQ  I   + NQT+LN +IT H +KE E  LK LGHE + +    + D   PL +   +A
Subjt:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPLNLSGPLA

TYK14602.1 hypothetical protein E5676_scaffold552G001110 [Cucumis melo var. makuwa]3.8e-0832.43Show/hide
Query:  QTSLNHMITLHAHKEVERRLKMLGHEDKEEASP-RRADTLSPL------NLSGPL---------------------------AVHHPTRIPKD-------
        + +LN +IT H +KE E  LK LG +  +E     ++ T  PL       L+ P+                             + P + PKD       
Subjt:  QTSLNHMITLHAHKEVERRLKMLGHEDKEEASP-RRADTLSPL------NLSGPL---------------------------AVHHPTRIPKD-------

Query:  LSVSHTQLSTAVSTLISLVIAQS----EMMRQMSVRHDRQFRAQMEYTHVALVQRVPAPVIPTDLETPFPPLARL-GDPEPHQDN
        L+V    LS        L+        EM  +M  R DR+F+A MEYTH   VQRVP PVIP +LETPFPP+ +  G P+P Q++
Subjt:  LSVSHTQLSTAVSTLISLVIAQS----EMMRQMSVRHDRQFRAQMEYTHVALVQRVPAPVIPTDLETPFPPLARL-GDPEPHQDN

TrEMBL top hitse value%identityAlignment
A0A5A7SLS8 Uncharacterized protein1.4e-0846.91Show/hide
Query:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPL
        M+ P+G +PFPST+EAL L+ +P L    Q PI GS+ +Q +LN  ITLH +KE ER LK L     EE         SPL
Subjt:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPL

A0A5A7UFG4 Uncharacterized protein6.2e-0946.99Show/hide
Query:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPLNL
        ME PKGA  FPS +E L+L+ +P L+++PQ  I   + NQT+LN +IT H +KE E  LK LGHE + E    + D   PL+L
Subjt:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPLNL

A0A5A7UH00 Uncharacterized protein3.9e-1137.59Show/hide
Query:  QTSLNHMITLHAHKEVERRLKMLGHEDKEEASP-RRADTLSPLNLSGPLAVHHPTRIPKDLSVSHTQLSTAVSTLISLVIAQSEMMRQMSVRHDRQFRAQ
        + +LN +IT H +KE E  LK LG +  +E     ++ T  PL  +    +  P    K L V  T    + S             + M  R DR+F+A 
Subjt:  QTSLNHMITLHAHKEVERRLKMLGHEDKEEASP-RRADTLSPLNLSGPLAVHHPTRIPKDLSVSHTQLSTAVSTLISLVIAQSEMMRQMSVRHDRQFRAQ

Query:  MEYTHVALVQRVPAPVIPTDLETPFPPLARL-GDPEPHQDN
        MEYTH   VQRVP PVIP +LETPFPP+ +  G P+P Q++
Subjt:  MEYTHVALVQRVPAPVIPTDLETPFPPLARL-GDPEPHQDN

A0A5D3BEA4 Uncharacterized protein3.7e-0943.18Show/hide
Query:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPLNLSGPLA
        ME PKGA  FPS +E L+L+ +P L+++PQ  I   + NQT+LN +IT H +KE E  LK LGHE + +    + D   PL +   +A
Subjt:  MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPLNLSGPLA

A0A5D3CT45 Uncharacterized protein1.8e-0832.43Show/hide
Query:  QTSLNHMITLHAHKEVERRLKMLGHEDKEEASP-RRADTLSPL------NLSGPL---------------------------AVHHPTRIPKD-------
        + +LN +IT H +KE E  LK LG +  +E     ++ T  PL       L+ P+                             + P + PKD       
Subjt:  QTSLNHMITLHAHKEVERRLKMLGHEDKEEASP-RRADTLSPL------NLSGPL---------------------------AVHHPTRIPKD-------

Query:  LSVSHTQLSTAVSTLISLVIAQS----EMMRQMSVRHDRQFRAQMEYTHVALVQRVPAPVIPTDLETPFPPLARL-GDPEPHQDN
        L+V    LS        L+        EM  +M  R DR+F+A MEYTH   VQRVP PVIP +LETPFPP+ +  G P+P Q++
Subjt:  LSVSHTQLSTAVSTLISLVIAQS----EMMRQMSVRHDRQFRAQMEYTHVALVQRVPAPVIPTDLETPFPPLARL-GDPEPHQDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTCCCAAGGGCGCCATTCCATTTCCTTCTACTGTTGAGGCCCTTTTCTTAAGGACTCTCCCCTATTTAAGTGTCGTCCCCCAAATGCCAATTTTGGGAAGTCT
TTGCAATCAGACGTCTTTAAATCACATGATCACTCTCCATGCACACAAGGAGGTTGAGAGGCGGTTAAAGATGCTTGGCCATGAAGACAAAGAAGAGGCTTCTCCAAGAC
GAGCTGATACACTATCGCCTCTCAACCTCTCGGGGCCACTAGCCGTCCACCACCCAACAAGGATACCAAAGGACCTTTCGGTGAGCCACACCCAACTTTCCACCGCGGTA
TCCACCCTCATCTCACTGGTCATTGCACAATCCGAGATGATGCGACAAATGTCAGTGAGGCATGATCGACAATTTAGAGCTCAAATGGAGTATACCCACGTGGCCCTTGT
ACAACGCGTGCCAGCACCGGTCATCCCGACAGATCTTGAAACACCCTTTCCACCACTCGCGCGTCTTGGCGATCCTGAACCCCACCAAGACAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCTCCCAAGGGCGCCATTCCATTTCCTTCTACTGTTGAGGCCCTTTTCTTAAGGACTCTCCCCTATTTAAGTGTCGTCCCCCAAATGCCAATTTTGGGAAGTCT
TTGCAATCAGACGTCTTTAAATCACATGATCACTCTCCATGCACACAAGGAGGTTGAGAGGCGGTTAAAGATGCTTGGCCATGAAGACAAAGAAGAGGCTTCTCCAAGAC
GAGCTGATACACTATCGCCTCTCAACCTCTCGGGGCCACTAGCCGTCCACCACCCAACAAGGATACCAAAGGACCTTTCGGTGAGCCACACCCAACTTTCCACCGCGGTA
TCCACCCTCATCTCACTGGTCATTGCACAATCCGAGATGATGCGACAAATGTCAGTGAGGCATGATCGACAATTTAGAGCTCAAATGGAGTATACCCACGTGGCCCTTGT
ACAACGCGTGCCAGCACCGGTCATCCCGACAGATCTTGAAACACCCTTTCCACCACTCGCGCGTCTTGGCGATCCTGAACCCCACCAAGACAATTAA
Protein sequenceShow/hide protein sequence
MEAPKGAIPFPSTVEALFLRTLPYLSVVPQMPILGSLCNQTSLNHMITLHAHKEVERRLKMLGHEDKEEASPRRADTLSPLNLSGPLAVHHPTRIPKDLSVSHTQLSTAV
STLISLVIAQSEMMRQMSVRHDRQFRAQMEYTHVALVQRVPAPVIPTDLETPFPPLARLGDPEPHQDN