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PI0012804 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012804
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:12146052..12147629
RNA-Seq ExpressionPI0012804
SyntenyPI0012804
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]9.1e-6172.22Show/hide
Query:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF
        MD H++AS++N FI SQ    L L+LL ND KRI  +PY+TRHRIRQLAYF MIH +DLVC +S RMD+RCF ILCHLLRTIAGL ST+++DVEEMV MF
Subjt:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF

Query:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE
        LH+LAHDVK RVIQRE +RSGET+SRHFN+VLLAV+ LHDELL KPQPV N CT+ RWRWFE
Subjt:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-6071.6Show/hide
Query:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF
        MD H++AS++N FI SQ    L L+LL ND KRI  +PY+TRHRIRQLAYF MIH +DLVC +S RMD+RCF ILCHLLRTIAGL ST+++DVEEMV MF
Subjt:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF

Query:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE
        LH+LAHDVK RVIQRE +RSGET+SRHFN+VLLAV+ LH+ELL KPQPV N CT+ RWRWFE
Subjt:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]9.1e-6172.22Show/hide
Query:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF
        MD H++AS++N FI SQ    L L+LL ND KRI  +PY+TRHRIRQLAYF MIH +DLVC +S RMD+RCF ILCHLLRTIAGL ST+++DVEEMV MF
Subjt:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF

Query:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE
        LH+LAHDVK RVIQRE +RSGET+SRHFN+VLLAV+ LHDELL KPQPV N CT+ RWRWFE
Subjt:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE

KAA0051057.1 retrotransposon protein [Cucumis melo var. makuwa]9.1e-6171.6Show/hide
Query:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF
        MD H++AS++N FI SQ    L L+LL ND KRI  +PY+TRHRIRQLAYF MIH +DLVCH+S RMD+RCF ILCHLLRTIAGL ST+++DVEEMV MF
Subjt:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF

Query:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE
        LH+L HDVK RVIQRE +RSGET+SRHFN+VLLAV+ LH+ELL KPQPV N CT+ RWRWFE
Subjt:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-6070.99Show/hide
Query:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF
        MD H++AS++N FI SQ    L L+LL ND KRI  +PY+TRHRIRQLAYF MIHE+DLVC +S RMD+RCF ILCHLLRTIAGL ST+++DVEEMV MF
Subjt:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF

Query:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE
        LH+LAHDVK RVIQRE +RSGET+ RHFN++ LAV+ LHDELL KPQPV N CT+ RWRWFE
Subjt:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein4.4e-6172.22Show/hide
Query:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF
        MD H++AS++N FI SQ    L L+LL ND KRI  +PY+TRHRIRQLAYF MIH +DLVC +S RMD+RCF ILCHLLRTIAGL ST+++DVEEMV MF
Subjt:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF

Query:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE
        LH+LAHDVK RVIQRE +RSGET+SRHFN+VLLAV+ LHDELL KPQPV N CT+ RWRWFE
Subjt:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE

A0A5A7TXW1 Retrotransposon protein4.4e-6172.22Show/hide
Query:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF
        MD H++AS++N FI SQ    L L+LL ND KRI  +PY+TRHRIRQLAYF MIH +DLVC +S RMD+RCF ILCHLLRTIAGL ST+++DVEEMV MF
Subjt:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF

Query:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE
        LH+LAHDVK RVIQRE +RSGET+SRHFN+VLLAV+ LHDELL KPQPV N CT+ RWRWFE
Subjt:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE

A0A5A7U9H2 Retrotransposon protein4.4e-6171.6Show/hide
Query:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF
        MD H++AS++N FI SQ    L L+LL ND KRI  +PY+TRHRIRQLAYF MIH +DLVCH+S RMD+RCF ILCHLLRTIAGL ST+++DVEEMV MF
Subjt:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF

Query:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE
        LH+L HDVK RVIQRE +RSGET+SRHFN+VLLAV+ LH+ELL KPQPV N CT+ RWRWFE
Subjt:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE

A0A5A7VHB0 Retrotransposon protein1.3e-6070.99Show/hide
Query:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF
        MD H++AS++N FI SQ    L L+LL ND KRI  +PY+TRHRIRQLAYF MIHE+DLVC +S RMD+RCF ILCHLLRTIAGL ST+++DVEEMV MF
Subjt:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF

Query:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE
        LH+LAHDVK RVIQRE +RSGET+ RHFN++ LAV+ LHDELL KPQPV N CT+ RWRWFE
Subjt:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE

A0A5D3BDX0 Retrotransposon protein1.3e-6071.6Show/hide
Query:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF
        MD H++AS++N FI SQ    L L+LL ND KRI  +PY+TRHRIRQLAYF MIH +DLVC +S RMD+RCF ILCHLLRTIAGL ST+++DVEEMV MF
Subjt:  MDTHDIASLLNVFITSQ----LTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMF

Query:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE
        LH+LAHDVK RVIQRE +RSGET+SRHFN+VLLAV+ LH+ELL KPQPV N CT+ RWRWFE
Subjt:  LHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein7.3e-0835.48Show/hide
Query:  IHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMFLHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKP
        + ++   C +  RM   CFT LC++L+T   LQ T  I +EE V MFL +  H+   R +     R+ ETV R F  VL A   L  + +  P
Subjt:  IHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMFLHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKP

AT5G28730.1 unknown protein6.8e-0635.71Show/hide
Query:  HMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMFLHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAV
        H I+ N++ C    RM    FT LC +L    GLQS+  I ++E V +FL + A +   R I      + ET+ R F+ VL A+
Subjt:  HMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMFLHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAV

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.4e-1139.36Show/hide
Query:  CHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMFLHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACT
        C  + RMDK  F  LC LL+T   L+ T  I +E  + +FL ++ H+++ R +Q     SGET+SRHFN VL AV+ +  +     QP +N+ T
Subjt:  CHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMFLHVLAHDVKIRVIQRELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACACACGACATTGCGTCCCTACTTAACGTGTTCATAACATCCCAACTGACGTTGGACTTGTTAATGAACGACAACAAGAGGATAATGAAAGTACCTTACGACAC
GAGGCATAGGATTAGACAGTTGGCTTACTTTCACATGATCCATGAAAACGACCTCGTGTGTCATCGAAGTGCGCGAATGGACAAACGATGCTTCACCATTTTATGTCATC
TACTCCGAACTATAGCTGGATTACAGTCTACTAAAATCATCGATGTCGAAGAAATGGTCACCATGTTCCTTCACGTACTGGCGCACGACGTGAAAATTCGTGTCATTCAA
CGTGAGTTACTGCGGTCCGGTGAGACGGTTTCACGCCATTTCAACCTCGTACTGCTGGCTGTTTTATGCCTCCATGACGAGCTTTTGGCGAAACCACAACCGGTGACAAA
CGCTTGCACAAATGCACGGTGGAGATGGTTCGAGTATGGCAACTTCTTCAAGGACCCAAAGCACCACTGGACGAAAGAGGAAGATGCCACCCTCGTTGAAGGTCTGGTGG
AATTGGTATCAGCCGGCGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATACACACGACATTGCGTCCCTACTTAACGTGTTCATAACATCCCAACTGACGTTGGACTTGTTAATGAACGACAACAAGAGGATAATGAAAGTACCTTACGACAC
GAGGCATAGGATTAGACAGTTGGCTTACTTTCACATGATCCATGAAAACGACCTCGTGTGTCATCGAAGTGCGCGAATGGACAAACGATGCTTCACCATTTTATGTCATC
TACTCCGAACTATAGCTGGATTACAGTCTACTAAAATCATCGATGTCGAAGAAATGGTCACCATGTTCCTTCACGTACTGGCGCACGACGTGAAAATTCGTGTCATTCAA
CGTGAGTTACTGCGGTCCGGTGAGACGGTTTCACGCCATTTCAACCTCGTACTGCTGGCTGTTTTATGCCTCCATGACGAGCTTTTGGCGAAACCACAACCGGTGACAAA
CGCTTGCACAAATGCACGGTGGAGATGGTTCGAGTATGGCAACTTCTTCAAGGACCCAAAGCACCACTGGACGAAAGAGGAAGATGCCACCCTCGTTGAAGGTCTGGTGG
AATTGGTATCAGCCGGCGGCTAG
Protein sequenceShow/hide protein sequence
MDTHDIASLLNVFITSQLTLDLLMNDNKRIMKVPYDTRHRIRQLAYFHMIHENDLVCHRSARMDKRCFTILCHLLRTIAGLQSTKIIDVEEMVTMFLHVLAHDVKIRVIQ
RELLRSGETVSRHFNLVLLAVLCLHDELLAKPQPVTNACTNARWRWFEYGNFFKDPKHHWTKEEDATLVEGLVELVSAGG