CuGenDBv2

Gene ID	PI0012843
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	ribosomal RNA-processing protein 17
Genome location	chr08:7481879..7493472
RNA-Seq Expression	PI0012843
Synteny	PI0012843
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008455785.1 PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]

4.5e-87

94.39

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRR+RIEARKKRKLEKDLVLYGGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK
        DQ  EDEEEEPLAP SEA TYDNGNVKVTV TSEVSRE EIDPIDKPQTA AQLLGKDKKHNLPITKKKLFKKV  QRSRPKLRSKRDKKKGRKKK
Subjt:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

5.7e-74

82.14

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVLYGG+LPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK
        D EE  EEE+P AP+SE TTYD+GN+KVTVITSEVSR+ EI PIDK QTAT QL+ KDKKHNLPITKKK FKKV  Q+SRPK RSKRDKKKGRKKK
Subjt:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

5.3e-72

78.28

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EK+LVL+GGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQE--EEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK
        D +  +EDEEE+PLAP+SE TTYD+GN+KVTV TSEV R++EIDPIDKPQ +T+QLL KDKKH+LP+TKKK FKKV  ++SR K RSK DKKKGRKKK
Subjt:  DQE--EEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

XP_031740787.1 ribosomal RNA-processing protein 17 isoform X1 [Cucumis sativus]

3.8e-86

93.94

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRR+RIEARKKRKLEKDLVL+GGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTA--TAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK
        DQ   +EEEEPLAPLSEATTYDNGNVKVTV TSEVSREDEIDPIDKPQTA  TAQLLGKDKKHNLPITKKKLFKKV  QR RPKLRSKRDKKKGRKKK
Subjt:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTA--TAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

1.5e-79

84.85

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MV+NDGEEG ELAQPHARHIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQ+EEA+RR RIEARKKR+LEKDLVLYGGVLPADR VD++ND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQE--EEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK
        D E  EEDEEE+PLAP SE TTYD+GN+KVTVITSEVSRE+EIDPIDKPQTAT QL  KDKKHNLP+TKKK FKKV  QRSRPK RSKRDK+KG+KKK
Subjt:  DQE--EEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

1.8e-86

93.94

Show/hide

Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRR+RIEARKKRKLEKDLVL+GGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTA--TAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK
        DQ   +EEEEPLAPLSEATTYDNGNVKVTV TSEVSREDEIDPIDKPQTA  TAQLLGKDKKHNLPITKKKLFKKV  QR RPKLRSKRDKKKGRKKK
Subjt:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTA--TAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

2.2e-87

94.39

Show/hide

Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRR+RIEARKKRKLEKDLVLYGGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK
        DQ  EDEEEEPLAP SEA TYDNGNVKVTV TSEVSRE EIDPIDKPQTA AQLLGKDKKHNLPITKKKLFKKV  QRSRPKLRSKRDKKKGRKKK
Subjt:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

2.7e-74

82.14

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVLYGG+LPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK
        D EE  EEE+P AP+SE TTYD+GN+KVTVITSEVSR+ EI PIDK QTAT QL+ KDKKHNLPITKKK FKKV  Q+SRPK RSKRDKKKGRKKK
Subjt:  DQEEEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

3.3e-72

78.79

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVL+GGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQE--EEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK
        D +  +EDEEE+PLAP+SE T YD+GN+KVTV TSEV R++EIDPIDKPQ +T+QLL KDKKH+LPITKKK FKKV  ++SR K RSK DKKKGRKKK
Subjt:  DQE--EEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

2.2e-71

77.78

Show/hide

Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND
        MVKN+  EGG L QP++RH+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVL+GGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQND

Query:  DQE--EEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK
        D +  +EDEEE+PLAP+SE TTYD+GN+KVTV TSEV RE+EIDPIDKPQ +T+QLL KDKKH+LPITKKK FKKV  ++SR K RSK DKKKGRKKK
Subjt:  DQE--EEDEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

1.4e-33

53.97

Show/hide

Query:  EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQEEE
        EE G LA P  ARHI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQ+EEA RR RIEARK RKLE+ +V   G    D    +  D+ + E
Subjt:  EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQEEE

Query:  DEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDK---KHNLPITKKKLFKKVVNQRSRPKLRSKRDKKK
        DEE EP A  S  T YD G +KVTV TSE+SRE+E +PI K +T + +     K   K  +P+ K K  K+   +RS  K   KRDKKK
Subjt:  DEEEEPLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDK---KHNLPITKKKLFKKVVNQRSRPKLRSKRDKKK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTGAAGAACGACGGAGAAGAAGGGGGCGAGCTTGCACAGCCTCATGCTCGACATATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAA
AGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTATGCGGCGGATACGCATCGAAGCACGAA
AAAAGAGAAAATTAGAAAAGGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGGGCGGTTGATGATCAGAATGATGATCAAGAGGAAGAGGATGAGGAAGAGGAG
CCATTAGCACCCCTTTCTGAGGCAACAACGTATGACAATGGAAATGTCAAAGTCACTGTGATAACAAGTGAGGTATCTCGGGAAGACGAAATCGATCCAATTGACAAGCC
ACAGACAGCAACAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTTGTAAACCAGAGGTCAAGGCCAAAGCTTC
GAAGTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

mRNA sequence

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AAAAAAACCTAAACACAGTGGGAGACAGGAAGAACTACAGGCAGCCGTGGGAACAAGGCCGAAGCGCCGGAATTTGGAGCTAAAAACGCACGGCGTGGGTCTTCTGTGTA
GAGTGCGGAACTCACGGCGGTGTGTCTCAGTTTTGGAGGTCAGAGCGGCGGGGTTTTTGGGTCTCTGTTCAGCGGCGGCGTAGAAGTCGAGTTTGTTATTCTCTTTCAAG
AGAGTTTTACAGTTACAAGGCGGTGCCATGGTGAAGAACGACGGAGAAGAAGGGGGCGAGCTTGCACAGCCTCATGCTCGACATATAAAGAAGAGAGCTCTCAGGAACAA
AGCTCTTTCTGTCTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTA
TGCGGCGGATACGCATCGAAGCACGAAAAAAGAGAAAATTAGAAAAGGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGGGCGGTTGATGATCAGAATGATGAT
CAAGAGGAAGAGGATGAGGAAGAGGAGCCATTAGCACCCCTTTCTGAGGCAACAACGTATGACAATGGAAATGTCAAAGTCACTGTGATAACAAGTGAGGTATCTCGGGA
AGACGAAATCGATCCAATTGACAAGCCACAGACAGCAACAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTTG
TAAACCAGAGGTCAAGGCCAAAGCTTCGAAGTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAGATAATTATACTAAGCTTCTTACTTACTCTTTGCTAAATGTTC
AATGTGATATGATTTATTTGTTTTTTTCATGAGAATACGGAGTGATCTTGAGCATTGGGTGTCTTTGAGGGTTTTGTATTATTACATTATAAAAGCTTATCCGTTTTGCA
AACTGCAAGTGCAAGTTTTCTTTTTAAGTGCAGCTCGATTTGTTTTCATTCAGCATTCCTAGAAGAAAAAACAACAAATCATCTAAGTGTAGAAAAATTATCGTATTCCC
TTACAAGTATGTACACGTTTGATGATTGATATATTTTTGGAATAACAAAGTAGTTTTCTTTAGCCTCAAATTTCAATTCTTATGGTAAATGGGATAGTAGTGTGTGTATC
TAGTCTCAACGTTCACCTTTTAGTGGTTGAAGAATCTACATCTACTTTCATT

Protein sequence

Show/hide protein sequence

MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRIRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQEEEDEEEE
PLAPLSEATTYDNGNVKVTVITSEVSREDEIDPIDKPQTATAQLLGKDKKHNLPITKKKLFKKVVNQRSRPKLRSKRDKKKGRKKK

PI0012843 (gene) of Melon (PI 482460) v1 genome