; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0012858 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012858
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:20846630..20847499
RNA-Seq ExpressionPI0012858
SyntenyPI0012858
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-5274.83Show/hide
Query:  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGH
        P  +Q+  +G ++ D    DAAA GALADKTP EARELI RM E SQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVG+
Subjt:  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGH

Query:  PNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR
        PNDKCP ++E  N++R+YDPH NTYN GWRDNPNLRWGNDNQ+
Subjt:  PNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.9e-5383.06Show/hide
Query:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD
        DA AGGALADK PTEARELIS+M E SQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E  N++RKYD
Subjt:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD

Query:  PHSNTYNAGWRDNPNLRWGNDNQR
        PH NTYN+GWRDNPNLRWGNDNQ+
Subjt:  PHSNTYNAGWRDNPNLRWGNDNQR

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-5375.52Show/hide
Query:  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGH
        P  +Q+  +G ++ D    D  AGGALADKTPTEARELISRM E SQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGH
Subjt:  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGH

Query:  PNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR
        PNDKC  ++E  N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+
Subjt:  PNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.3e-5383.87Show/hide
Query:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD
        D AAGGALADKTPTEARELISRM E S++FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E  N++R+YD
Subjt:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD

Query:  PHSNTYNAGWRDNPNLRWGNDNQR
        PHSNTYN+GWRDN NLRWGNDNQ+
Subjt:  PHSNTYNAGWRDNPNLRWGNDNQR

TYK19600.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.3e-5383.06Show/hide
Query:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD
        DAAAGGALADKTPTEARELISRMTE SQ+FGNRASEL+N LTK VSELKSQMLNMTTLLTS +QG  +KV KCGVCGLVGHPNDKCP+++E  N++RKYD
Subjt:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD

Query:  PHSNTYNAGWRDNPNLRWGNDNQR
        PH NTYN+GWRDNPNLRWGNDNQ+
Subjt:  PHSNTYNAGWRDNPNLRWGNDNQR

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein6.9e-5374.83Show/hide
Query:  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGH
        P  +Q+  +G ++ D    DAAA GALADKTP EARELI RM E SQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVG+
Subjt:  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGH

Query:  PNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR
        PNDKCP ++E  N++R+YDPH NTYN GWRDNPNLRWGNDNQ+
Subjt:  PNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR

A0A5A7V0Q7 Retrotransposon gag protein1.1e-5375.52Show/hide
Query:  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGH
        P  +Q+  +G ++ D    D  AGGALADKTPTEARELISRM E SQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGH
Subjt:  PLHLQFDQNGTVAGDH---DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGH

Query:  PNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR
        PNDKC  ++E  N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+
Subjt:  PNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR

A0A5D3CB46 Retrotransposon gag protein4.0e-5383.87Show/hide
Query:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD
        D AAGGALADKTPTEARELISRM E S++FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E  N++R+YD
Subjt:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD

Query:  PHSNTYNAGWRDNPNLRWGNDNQR
        PHSNTYN+GWRDN NLRWGNDNQ+
Subjt:  PHSNTYNAGWRDNPNLRWGNDNQR

A0A5D3CRR8 Retrotransposon gag protein2.4e-5383.06Show/hide
Query:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD
        DA AGGALADK PTEARELIS+M E SQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E  N++RKYD
Subjt:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD

Query:  PHSNTYNAGWRDNPNLRWGNDNQR
        PH NTYN+GWRDNPNLRWGNDNQ+
Subjt:  PHSNTYNAGWRDNPNLRWGNDNQR

A0A5D3D815 Retrotransposon gag protein4.0e-5383.06Show/hide
Query:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD
        DAAAGGALADKTPTEARELISRMTE SQ+FGNRASEL+N LTK VSELKSQMLNMTTLLTS +QG  +KV KCGVCGLVGHPNDKCP+++E  N++RKYD
Subjt:  DAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYD

Query:  PHSNTYNAGWRDNPNLRWGNDNQR
        PH NTYN+GWRDNPNLRWGNDNQ+
Subjt:  PHSNTYNAGWRDNPNLRWGNDNQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCTAACTATCCTTTTATACTTTAAACCTAACATCAATTTGAAAGCACGGTTTGCTCCCTTGGGTACGACAACTTCTTCTTCAACAATACTTCCACTACATCTACA
GTTCGATCAAAATGGCACCGTTGCCGGGGACCACGATGCTGCAGCAGGTGGTGCTTTGGCGGATAAAACCCCTACTGAGGCTAGAGAGCTCATTTCAAGGATGACTGAAT
ATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGATAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTT
GTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGTGGCAAATGTCATTAGGAAGTA
CGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCTAACTATCCTTTTATACTTTAAACCTAACATCAATTTGAAAGCACGGTTTGCTCCCTTGGGTACGACAACTTCTTCTTCAACAATACTTCCACTACATCTACA
GTTCGATCAAAATGGCACCGTTGCCGGGGACCACGATGCTGCAGCAGGTGGTGCTTTGGCGGATAAAACCCCTACTGAGGCTAGAGAGCTCATTTCAAGGATGACTGAAT
ATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGATAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTT
GTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGTGGCAAATGTCATTAGGAAGTA
CGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGTAA
Protein sequenceShow/hide protein sequence
MPLTILLYFKPNINLKARFAPLGTTTSSSTILPLHLQFDQNGTVAGDHDAAAGGALADKTPTEARELISRMTEYSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSF
VQGGSVKVAKCGVCGLVGHPNDKCPDLVEVANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPS