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PI0012884 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012884
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr09:9129146..9130475
RNA-Seq ExpressionPI0012884
SyntenyPI0012884
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]6.4e-6248.82Show/hide
Query:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGR------------LHW----YVQCCGRGKEEG-
        +FV G  +E  S LA +MGF LG LPV YL +PLL GRLR +DCAPLIQRITSRI SW ARVLSF GR            ++W     +  C   K +  
Subjt:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGR------------LHW----YVQCCGRGKEEG-

Query:  --------RGG--------AKVAW-------VEVAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHV--------------------RSIIKQ
                R G         K+ W       + VAWVEAYILK +SLW+VD+G  + WCLRAILR+ DSL+ HV                      I++Q
Subjt:  --------RGG--------AKVAW-------VEVAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHV--------------------RSIIKQ

Query:  MGERVMYDATSSMEARLSKFIGSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGGG
        +GERV+YDA S  EARLS+FIG DGEW+W RVS EL+DLW+R+Q V  CLS+ DRWVWVP H  GF I+SA + IRP+ GRV W+G       WGGG
Subjt:  MGERVMYDATSSMEARLSKFIGSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGGG

KAA0049769.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.5e-6352.77Show/hide
Query:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW---YVQCCGRGKEEG--
        +FV GV++E  S LA  MGF  G LPV YLG+PLL GRLRS DCAP+IQRITSRI SW+ARVLSF GRL            +W   +V       EEG  
Subjt:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW---YVQCCGRGKEEG--

Query:  --RGG--------AKVAWVE--------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFIGSDG
          R G         K+ W+         VAWVEAYILKGRSLW VD+  G+ WCLRAILR          +I++Q+GERV+YDA S  EARLS FIGS+G
Subjt:  --RGG--------AKVAWVE--------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFIGSDG

Query:  EWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGG
        EW WSRV  EL++LW+R+Q V  CLS+ D WVWVP    GF I+SAW+ IRP+ GRV W G       WGG
Subjt:  EWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGG

KAA0060725.1 uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa]1.3e-5449.82Show/hide
Query:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW--------YV-------
        +FV GV  E  S LA SMGF LG LPV YLG+PLL GRLRS DCAPLIQRITS I SW ARVLSF G L            +W        YV       
Subjt:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW--------YV-------

Query:  --QCCGRGKEEGRGGAKVAWVEVAWV----EAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFIGSDGEW
              RGKEEGRGG KVAWVEV       E  I  G S W++  G                       I++Q+GERV YDA S  EARLS FIG DGEW
Subjt:  --QCCGRGKEEGRGGAKVAWVEVAWV----EAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFIGSDGEW

Query:  RWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGGGMLS
        +W RVS EL+DLW+R+Q V  CLS+ DRWVW+P    GF I+S WE IRP+ GRV W      S  WGG  +S
Subjt:  RWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGGGMLS

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]1.3e-6548.15Show/hide
Query:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW--------YV-------
        +FV GV++E  S LA  MGF  G L V YLG+PLL GRLRS D APLIQRITSRI SW ARVLSF GRL            +W        YV       
Subjt:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW--------YV-------

Query:  --QCCGRGKEEGRGGAKVAWVE--------------------------------------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREH
              RGKEEGRGG KVAWV+                                      VAWVEAYILKGRSLW VD+  GK WCLRAILR+ + L+  
Subjt:  --QCCGRGKEEGRGGAKVAWVE--------------------------------------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREH

Query:  VR--------------------SIIKQMGERVMYDATSSMEARLSKFIGSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWE
        VR                    +I++Q+GERVMYDA S  +ARLS FI  DGEW W RVS EL+DLWER+Q V  CLS+ D WVWVP    GF I+SAWE
Subjt:  VR--------------------SIIKQMGERVMYDATSSMEARLSKFIGSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWE

Query:  VIRPK-GRVCWLGYGFLSQGWGGG
         +RP+ GRV W G       WGGG
Subjt:  VIRPK-GRVCWLGYGFLSQGWGGG

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.2e-6150.55Show/hide
Query:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW---YVQCCGRGKEEGR-
        +FV GV++E  S LA  MGF  G LPV YLG+PLL GRLRS DCAP+IQRITSRI SW+ARVLSF GRL            +W   +V       E  + 
Subjt:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW---YVQCCGRGKEEGR-

Query:  ---------------GGAKVAWVE--------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFI
                          K+ W+         VAWVEAYILKGRSLW VD+  G+ WCLRAILR          +I++Q+GERV+YDA S  EARLS FI
Subjt:  ---------------GGAKVAWVE--------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFI

Query:  GSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGG
        GS+GEW WSRV  EL++LW+R+Q V  CLS+ D WVWVP    GF I+SAW+ IRP+ GRV W G       WGG
Subjt:  GSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGG

TrEMBL top hitse value%identityAlignment
A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein3.1e-6248.82Show/hide
Query:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGR------------LHW----YVQCCGRGKEEG-
        +FV G  +E  S LA +MGF LG LPV YL +PLL GRLR +DCAPLIQRITSRI SW ARVLSF GR            ++W     +  C   K +  
Subjt:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGR------------LHW----YVQCCGRGKEEG-

Query:  --------RGG--------AKVAW-------VEVAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHV--------------------RSIIKQ
                R G         K+ W       + VAWVEAYILK +SLW+VD+G  + WCLRAILR+ DSL+ HV                      I++Q
Subjt:  --------RGG--------AKVAW-------VEVAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHV--------------------RSIIKQ

Query:  MGERVMYDATSSMEARLSKFIGSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGGG
        +GERV+YDA S  EARLS+FIG DGEW+W RVS EL+DLW+R+Q V  CLS+ DRWVWVP H  GF I+SA + IRP+ GRV W+G       WGGG
Subjt:  MGERVMYDATSSMEARLSKFIGSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGGG

A0A5A7U8G1 Non-LTR retroelement reverse transcriptase-like protein2.2e-6352.77Show/hide
Query:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW---YVQCCGRGKEEG--
        +FV GV++E  S LA  MGF  G LPV YLG+PLL GRLRS DCAP+IQRITSRI SW+ARVLSF GRL            +W   +V       EEG  
Subjt:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW---YVQCCGRGKEEG--

Query:  --RGG--------AKVAWVE--------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFIGSDG
          R G         K+ W+         VAWVEAYILKGRSLW VD+  G+ WCLRAILR          +I++Q+GERV+YDA S  EARLS FIGS+G
Subjt:  --RGG--------AKVAWVE--------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFIGSDG

Query:  EWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGG
        EW WSRV  EL++LW+R+Q V  CLS+ D WVWVP    GF I+SAW+ IRP+ GRV W G       WGG
Subjt:  EWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGG

A0A5A7V3Z0 Reverse transcriptase domain-containing protein6.1e-6648.15Show/hide
Query:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW--------YV-------
        +FV GV++E  S LA  MGF  G L V YLG+PLL GRLRS D APLIQRITSRI SW ARVLSF GRL            +W        YV       
Subjt:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW--------YV-------

Query:  --QCCGRGKEEGRGGAKVAWVE--------------------------------------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREH
              RGKEEGRGG KVAWV+                                      VAWVEAYILKGRSLW VD+  GK WCLRAILR+ + L+  
Subjt:  --QCCGRGKEEGRGGAKVAWVE--------------------------------------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREH

Query:  VR--------------------SIIKQMGERVMYDATSSMEARLSKFIGSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWE
        VR                    +I++Q+GERVMYDA S  +ARLS FI  DGEW W RVS EL+DLWER+Q V  CLS+ D WVWVP    GF I+SAWE
Subjt:  VR--------------------SIIKQMGERVMYDATSSMEARLSKFIGSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWE

Query:  VIRPK-GRVCWLGYGFLSQGWGGG
         +RP+ GRV W G       WGGG
Subjt:  VIRPK-GRVCWLGYGFLSQGWGGG

A0A5A7V4C1 Reverse transcriptase domain-containing protein6.3e-5549.82Show/hide
Query:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW--------YV-------
        +FV GV  E  S LA SMGF LG LPV YLG+PLL GRLRS DCAPLIQRITS I SW ARVLSF G L            +W        YV       
Subjt:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW--------YV-------

Query:  --QCCGRGKEEGRGGAKVAWVEVAWV----EAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFIGSDGEW
              RGKEEGRGG KVAWVEV       E  I  G S W++  G                       I++Q+GERV YDA S  EARLS FIG DGEW
Subjt:  --QCCGRGKEEGRGGAKVAWVEVAWV----EAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFIGSDGEW

Query:  RWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGGGMLS
        +W RVS EL+DLW+R+Q V  CLS+ DRWVW+P    GF I+S WE IRP+ GRV W      S  WGG  +S
Subjt:  RWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGGGMLS

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein2.0e-6150.55Show/hide
Query:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW---YVQCCGRGKEEGR-
        +FV GV++E  S LA  MGF  G LPV YLG+PLL GRLRS DCAP+IQRITSRI SW+ARVLSF GRL            +W   +V       E  + 
Subjt:  MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL------------HW---YVQCCGRGKEEGR-

Query:  ---------------GGAKVAWVE--------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFI
                          K+ W+         VAWVEAYILKGRSLW VD+  G+ WCLRAILR          +I++Q+GERV+YDA S  EARLS FI
Subjt:  ---------------GGAKVAWVE--------VAWVEAYILKGRSLWSVDNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFI

Query:  GSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGG
        GS+GEW WSRV  EL++LW+R+Q V  CLS+ D WVWVP    GF I+SAW+ IRP+ GRV W G       WGG
Subjt:  GSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPK-GRVCWLGYGFLSQGWGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-0944.78Show/hide
Query:  VVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL
        + GV     + +  S  FA G LPV YLG+PLL  ++ ++D  PL+++I  RI  W AR LSF GRL
Subjt:  VVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTTGTGGGGGTTGACAGTGAGGGTGTTTCTGTGTTGGCAGATAGTATGGGGTTTGCGCTAGGTACTCTTCCTGTTCATTACCTGGGTATTCCCTTACTCTTTGG
TAGGTTGCGGTCTGCGGATTGTGCGCCTCTCATCCAGCGTATTACTAGTCGGATTTGGTCTTGGTTGGCTAGAGTTTTGTCCTTTGTTGGGAGACTTCATTGGTACGTTC
AGTGTTGCGGAAGGGGTAAGGAAGAAGGTAGAGGGGGTGCTAAGGTCGCTTGGGTGGAGGTGGCTTGGGTGGAGGCCTATATTCTGAAGGGGCGGTCTTTGTGGTCTGTA
GACAATGGGGCTGGAAAGCCCTGGTGTCTTCGTGCTATCCTGCGACAGTGTGATAGCCTTAGAGAGCATGTCCGCTCGATCATTAAGCAGATGGGGGAGAGGGTGATGTA
TGATGCGACGAGTAGTATGGAGGCTAGGCTTTCAAAGTTCATTGGATCGGATGGTGAGTGGAGGTGGTCGAGGGTGTCTAGGGAGTTACTTGATTTGTGGGAGAGGATTC
AAGGTGTCTGTCTGTGTCTGAGTATTGGGGACCGGTGGGTGTGGGTTCCGAGTCATTGGAGTGGGTTTATGATTTCGAGTGCGTGGGAGGTTATTCGTCCTAAGGGTCGG
GTTTGTTGGCTTGGCTATGGCTTCCTCTCACAGGGTTGGGGGGGTGGGATGTTGAGTTGTCTTGGGTCTGTCTTAAGGGCTCGTGAGCCTAATGTCCTGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTTGTGGGGGTTGACAGTGAGGGTGTTTCTGTGTTGGCAGATAGTATGGGGTTTGCGCTAGGTACTCTTCCTGTTCATTACCTGGGTATTCCCTTACTCTTTGG
TAGGTTGCGGTCTGCGGATTGTGCGCCTCTCATCCAGCGTATTACTAGTCGGATTTGGTCTTGGTTGGCTAGAGTTTTGTCCTTTGTTGGGAGACTTCATTGGTACGTTC
AGTGTTGCGGAAGGGGTAAGGAAGAAGGTAGAGGGGGTGCTAAGGTCGCTTGGGTGGAGGTGGCTTGGGTGGAGGCCTATATTCTGAAGGGGCGGTCTTTGTGGTCTGTA
GACAATGGGGCTGGAAAGCCCTGGTGTCTTCGTGCTATCCTGCGACAGTGTGATAGCCTTAGAGAGCATGTCCGCTCGATCATTAAGCAGATGGGGGAGAGGGTGATGTA
TGATGCGACGAGTAGTATGGAGGCTAGGCTTTCAAAGTTCATTGGATCGGATGGTGAGTGGAGGTGGTCGAGGGTGTCTAGGGAGTTACTTGATTTGTGGGAGAGGATTC
AAGGTGTCTGTCTGTGTCTGAGTATTGGGGACCGGTGGGTGTGGGTTCCGAGTCATTGGAGTGGGTTTATGATTTCGAGTGCGTGGGAGGTTATTCGTCCTAAGGGTCGG
GTTTGTTGGCTTGGCTATGGCTTCCTCTCACAGGGTTGGGGGGGTGGGATGTTGAGTTGTCTTGGGTCTGTCTTAAGGGCTCGTGAGCCTAATGTCCTGTTTTAG
Protein sequenceShow/hide protein sequence
MFVVGVDSEGVSVLADSMGFALGTLPVHYLGIPLLFGRLRSADCAPLIQRITSRIWSWLARVLSFVGRLHWYVQCCGRGKEEGRGGAKVAWVEVAWVEAYILKGRSLWSV
DNGAGKPWCLRAILRQCDSLREHVRSIIKQMGERVMYDATSSMEARLSKFIGSDGEWRWSRVSRELLDLWERIQGVCLCLSIGDRWVWVPSHWSGFMISSAWEVIRPKGR
VCWLGYGFLSQGWGGGMLSCLGSVLRAREPNVLF