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PI0012893 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012893
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:12627919..12628380
RNA-Seq ExpressionPI0012893
SyntenyPI0012893
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.4e-5076.47Show/hide
Query:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER
        MT  KAASK++  +D+Y  LVTQSH KRSMQEQEQG VL KKS EQL+ESPKGGI+IR+NPLFNNSTPAS+LS+KES LEVVSVMM DVT EA M EMER
Subjt:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER

Query:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
        KIN LMK VEERDHEIAALKD MKA ET+ESSQTP VKA DKGK   +ENQ Q
Subjt:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ

KAA0032461.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-5077.78Show/hide
Query:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER
        MT  KAASK++ A+D+Y  LVTQSH KRSMQEQEQG VL KKS EQL+ESPKGGIIIR+NPLFNNSTPAS+LS+KES LEVVSVMM DV  EA M +MER
Subjt:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER

Query:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
        KIN LMK VEERDHEIAALKD MKA ETAESSQTP VKA DKGK   QENQ Q
Subjt:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ

KAA0040518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-4976.47Show/hide
Query:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER
        M  +K ASK++ A+D+Y  LVTQSH KRSMQEQEQG VL KKS EQL+ESPKG IIIR+NPLFNNSTPAS+LS+KES LEVVSVMM DVTTEA M EME+
Subjt:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER

Query:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
        KIN LMK VEERDHEIAALKD MKA ETAESS+TP VKA DKGK   QENQ Q
Subjt:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ

KAA0066644.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.1e-5278.43Show/hide
Query:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER
        M   K ASK + A+D+YT LVTQSH KRSMQEQEQGSVL KKS EQL+ESPKGGIII++NPLFNNST AS+LS+KES LEVVSVMMADVT EA M EMER
Subjt:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER

Query:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
        KIN LMK +EERDHEIAALKD +KA ETAESS+TPAVKA+DKGKV  QENQTQ
Subjt:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ

TYK04088.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-5177.78Show/hide
Query:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER
        M   K ASK +  +D+YT LVTQSH KRSMQEQEQGSVL KKS EQL+ESPKGGIII++NPLFNNST AS+LS+KES LEVVSVMMADVT EA M EMER
Subjt:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER

Query:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
        KIN LMK +EERDHEIAALKD +KA ETAESS+TPAVKA+DKGKV  QENQTQ
Subjt:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ

TrEMBL top hitse value%identityAlignment
A0A5A7SRE2 Ty3-gypsy retrotransposon protein1.6e-5076.47Show/hide
Query:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER
        MT  KAASK++  +D+Y  LVTQSH KRSMQEQEQG VL KKS EQL+ESPKGGI+IR+NPLFNNSTPAS+LS+KES LEVVSVMM DVT EA M EMER
Subjt:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER

Query:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
        KIN LMK VEERDHEIAALKD MKA ET+ESSQTP VKA DKGK   +ENQ Q
Subjt:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ

A0A5A7SSD3 Retrotransposon gag protein1.3e-5077.78Show/hide
Query:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER
        MT  KAASK++ A+D+Y  LVTQSH KRSMQEQEQG VL KKS EQL+ESPKGGIIIR+NPLFNNSTPAS+LS+KES LEVVSVMM DV  EA M +MER
Subjt:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER

Query:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
        KIN LMK VEERDHEIAALKD MKA ETAESSQTP VKA DKGK   QENQ Q
Subjt:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ

A0A5A7VH30 Ty3-gypsy retrotransposon protein3.9e-5278.43Show/hide
Query:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER
        M   K ASK + A+D+YT LVTQSH KRSMQEQEQGSVL KKS EQL+ESPKGGIII++NPLFNNST AS+LS+KES LEVVSVMMADVT EA M EMER
Subjt:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER

Query:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
        KIN LMK +EERDHEIAALKD +KA ETAESS+TPAVKA+DKGKV  QENQTQ
Subjt:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ

A0A5D3BYI9 Ty3-gypsy retrotransposon protein1.1e-5177.78Show/hide
Query:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER
        M   K ASK +  +D+YT LVTQSH KRSMQEQEQGSVL KKS EQL+ESPKGGIII++NPLFNNST AS+LS+KES LEVVSVMMADVT EA M EMER
Subjt:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER

Query:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
        KIN LMK +EERDHEIAALKD +KA ETAESS+TPAVKA+DKGKV  QENQTQ
Subjt:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ

A0A5D3DIN4 Ty3-gypsy retrotransposon protein8.2e-5076.47Show/hide
Query:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER
        M  +K ASK++ A+D+Y  LVTQSH KRSMQEQEQG VL KKS EQL+ESPKG IIIR+NPLFNNSTPAS+LS+KES LEVVSVMM DVTTEA M EME+
Subjt:  MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMER

Query:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
        KIN LMK VEERDHEIAALKD MKA ETAESS+TP VKA DKGK   QENQ Q
Subjt:  KINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACTAAGGAAAGCTGCATCCAAAGCTACTATCGCAAACGACACTTACACTAGACTTGTGACCCAAAGTCACTCAAAGAGGAGCATGCAAGAACAAGAACAAGGTTC
CGTCCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCCTAAAGGCGGGATCATCATTAGAGAGAATCCTTTGTTCAATAACTCTACTCCTGCTTCAGATCTATCAG
AGAAAGAATCACAACTTGAAGTAGTGTCTGTCATGATGGCAGATGTAACAACTGAGGCAGCCATGACAGAGATGGAGAGGAAAATAAATTCTCTAATGAAAGCTGTCGAG
GAGCGAGATCATGAAATCGCTGCCTTGAAAGATCATATGAAAGCTCGTGAAACTGCTGAGTCGAGCCAAACTCCTGCTGTCAAAGCTGATGATAAAGGAAAAGTTACATT
TCAGGAAAACCAAACACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACACTAAGGAAAGCTGCATCCAAAGCTACTATCGCAAACGACACTTACACTAGACTTGTGACCCAAAGTCACTCAAAGAGGAGCATGCAAGAACAAGAACAAGGTTC
CGTCCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCCTAAAGGCGGGATCATCATTAGAGAGAATCCTTTGTTCAATAACTCTACTCCTGCTTCAGATCTATCAG
AGAAAGAATCACAACTTGAAGTAGTGTCTGTCATGATGGCAGATGTAACAACTGAGGCAGCCATGACAGAGATGGAGAGGAAAATAAATTCTCTAATGAAAGCTGTCGAG
GAGCGAGATCATGAAATCGCTGCCTTGAAAGATCATATGAAAGCTCGTGAAACTGCTGAGTCGAGCCAAACTCCTGCTGTCAAAGCTGATGATAAAGGAAAAGTTACATT
TCAGGAAAACCAAACACAATAA
Protein sequenceShow/hide protein sequence
MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVE
ERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ