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PI0012901 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012901
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr10:14487284..14488068
RNA-Seq ExpressionPI0012901
SyntenyPI0012901
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053979.1 Integrase, catalytic core [Cucumis melo var. makuwa]2.9e-1871.05Show/hide
Query:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGS
        HK+GHIL+   TRPP PPGHSHKPK SP  G+SSVVAAAT  D T+  +FQL DL+DLLKQVISSNSTALA T G+
Subjt:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGS

KAA0055910.1 Copia protein [Cucumis melo var. makuwa]1.2e-1951.54Show/hide
Query:  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPD
        +K YLRRKDLAL PLC L+ PLQ LI  +   S           +     ++     HK+GH L+   T PP P GHSHKPK S  +GSSSVV A TS D
Subjt:  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPD

Query:  TTSSPSFQLHDLYDLLKQVISSNSTALAAT
         T   S QL DL+DLLKQVI S STALA T
Subjt:  TTSSPSFQLHDLYDLLKQVISSNSTALAAT

TYK28114.1 Copia protein [Cucumis melo var. makuwa]1.6e-1951.54Show/hide
Query:  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPD
        +K YLRRKDLAL PLC L+ PLQ LI  +   S           +     ++     HK+GH L+   T PP P GHSHKPK S  +GSSSVV A TS D
Subjt:  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPD

Query:  TTSSPSFQLHDLYDLLKQVISSNSTALAAT
         T   S QL DL+DLLKQVI S STALA T
Subjt:  TTSSPSFQLHDLYDLLKQVISSNSTALAAT

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]4.2e-2571.28Show/hide
Query:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGSGSSDGPRDWYGTKGGTII
        HK+GHIL+   TRPP PPGHSHKPK S   GSSSVVAAATS D T   S QL DL+DLLKQVISS STALA T GSG SDG  DW+GT+GG+II
Subjt:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGSGSSDGPRDWYGTKGGTII

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]6.8e-2365.96Show/hide
Query:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGSGSSDGPRDWYGTKGGTII
        HK+GHIL+   TRPP PPG  +KPKSS    S  +VAAAT  D T+  +FQL+DL+DLLKQVISSNSTALA T GSG S+G  DWYGT+GGTII
Subjt:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGSGSSDGPRDWYGTKGGTII

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882002.1e-2571.28Show/hide
Query:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGSGSSDGPRDWYGTKGGTII
        HK+GHIL+   TRPP PPGHSHKPK S   GSSSVVAAATS D T   S QL DL+DLLKQVISS STALA T GSG SDG  DW+GT+GG+II
Subjt:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGSGSSDGPRDWYGTKGGTII

A0A5A7TGJ6 Putative mitochondrial protein2.7e-1771.05Show/hide
Query:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGS
        HK+GHIL+   TRPP PPGHSHKPK S   GSSSVVAAATS D T   S QL DL+DLLKQVISS STALA T G+
Subjt:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGS

A0A5A7UKE6 Integrase, catalytic core1.4e-1871.05Show/hide
Query:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGS
        HK+GHIL+   TRPP PPGHSHKPK SP  G+SSVVAAAT  D T+  +FQL DL+DLLKQVISSNSTALA T G+
Subjt:  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGS

A0A5A7UL86 Copia protein5.8e-2051.54Show/hide
Query:  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPD
        +K YLRRKDLAL PLC L+ PLQ LI  +   S           +     ++     HK+GH L+   T PP P GHSHKPK S  +GSSSVV A TS D
Subjt:  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPD

Query:  TTSSPSFQLHDLYDLLKQVISSNSTALAAT
         T   S QL DL+DLLKQVI S STALA T
Subjt:  TTSSPSFQLHDLYDLLKQVISSNSTALAAT

A0A5D3DX62 Copia protein7.5e-2051.54Show/hide
Query:  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPD
        +K YLRRKDLAL PLC L+ PLQ LI  +   S           +     ++     HK+GH L+   T PP P GHSHKPK S  +GSSSVV A TS D
Subjt:  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPD

Query:  TTSSPSFQLHDLYDLLKQVISSNSTALAAT
         T   S QL DL+DLLKQVI S STALA T
Subjt:  TTSSPSFQLHDLYDLLKQVISSNSTALAAT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGTTCGGGCTGCCCTCTTACACCGCAACCCTCTACCATCTCTTGACGCCGTCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGATCCTCTATG
CACTCTGATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGTCACCTTCTGCAAATATTGTAAACTCCAAGGACACAAGATTGCTAATTGTCCTATCATTAA
GTGCAGGTACACACAAGCAAGGTCACATCTTGGAAATCTATCTAACTCGTCCACCGTGCCCTCCTGGTCACTCACACAAACCCAAGTCCTCACCTAATTTGGGTTCCTCA
TCTGTGGTTGCTGCTGCCACCTCACCTGACACTACATCATCTCCAAGCTTTCAGTTACATGACCTCTATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCCT
TGCTGCCACATCAGGTTCAGGATCCTCAGACGGGCCACGTGATTGGTACGGGACGAAAGGTGGGACGATTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTGTTCGGGCTGCCCTCTTACACCGCAACCCTCTACCATCTCTTGACGCCGTCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGATCCTCTATG
CACTCTGATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGTCACCTTCTGCAAATATTGTAAACTCCAAGGACACAAGATTGCTAATTGTCCTATCATTAA
GTGCAGGTACACACAAGCAAGGTCACATCTTGGAAATCTATCTAACTCGTCCACCGTGCCCTCCTGGTCACTCACACAAACCCAAGTCCTCACCTAATTTGGGTTCCTCA
TCTGTGGTTGCTGCTGCCACCTCACCTGACACTACATCATCTCCAAGCTTTCAGTTACATGACCTCTATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCCT
TGCTGCCACATCAGGTTCAGGATCCTCAGACGGGCCACGTGATTGGTACGGGACGAAAGGTGGGACGATTATTTGA
Protein sequenceShow/hide protein sequence
MNLFGLPSYTATLYHLLTPSFRKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAGTHKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSS
SVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGSGSSDGPRDWYGTKGGTII