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PI0012927 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012927
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:12148168..12148368
RNA-Seq ExpressionPI0012927
SyntenyPI0012927
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036810.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]1.1e-0857.58Show/hide
Query:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV
        MGT+    SEG+  S+G KRKRGGQA EM +II +A EYANDQLK I EW   + Q+AS T  K V
Subjt:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV

KAA0047716.1 retrotransposon protein [Cucumis melo var. makuwa]3.7e-0961.54Show/hide
Query:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKV
        MGT+  R S+GR  S+GSKRK+G Q  E TKII SAMEYAN+ L  I +WS  QRQDASVT  +V
Subjt:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKV

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-0856.06Show/hide
Query:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV
        MGTR+ R+SEGR  SSGSK+KRGG   +   I+ +A+EY N+QL  I EW   QRQDA+ TR +VV
Subjt:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-1163.64Show/hide
Query:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV
        MGTR  R +EGR GSSGSKRK+GGQA E  +II + ME++ND+LKAIVEW   QRQDAS    +VV
Subjt:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV

TYK08370.1 retrotransposon protein [Cucumis melo var. makuwa]3.7e-0961.54Show/hide
Query:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKV
        MGT+  R S+GR  S+GSKRK+G Q  E TKII SAMEYAN+ L  I +WS  QRQDASVT  +V
Subjt:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKV

TrEMBL top hitse value%identityAlignment
A0A5A7T0C2 RING-H2 finger protein ATL665.2e-0957.58Show/hide
Query:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV
        MGT+    SEG+  S+G KRKRGGQA EM +II +A EYANDQLK I EW   + Q+AS T  K V
Subjt:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV

A0A5A7TZA5 Retrotransposon protein1.1e-0856.06Show/hide
Query:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV
        MGTR+ R+SEGR  SSGSK+KRGG   +   I+ +A+EY N+QL  I EW   QRQDA+ TR +VV
Subjt:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV

A0A5A7U0G0 Retrotransposon protein1.8e-0961.54Show/hide
Query:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKV
        MGT+  R S+GR  S+GSKRK+G Q  E TKII SAMEYAN+ L  I +WS  QRQDASVT  +V
Subjt:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKV

A0A5A7V469 Retrotransposon protein2.5e-1163.64Show/hide
Query:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV
        MGTR  R +EGR GSSGSKRK+GGQA E  +II + ME++ND+LKAIVEW   QRQDAS    +VV
Subjt:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV

A0A5D3CAJ4 Retrotransposon protein1.8e-0961.54Show/hide
Query:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKV
        MGT+  R S+GR  S+GSKRK+G Q  E TKII SAMEYAN+ L  I +WS  QRQDASVT  +V
Subjt:  MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTACACGATCCCGTCGGTTGTCTGAGGGTAGGGCTGGTTCGAGTGGTTCGAAGAGGAAACGGGGAGGGCAAGCGTTCGAGATGACAAAAATTATTCACAGTGCCAT
GGAATATGCGAACGACCAGCTGAAGGCCATTGTAGAATGGTCCAAAGAACAACGCCAAGATGCAAGCGTGACACGTGCGAAAGTCGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTACACGATCCCGTCGGTTGTCTGAGGGTAGGGCTGGTTCGAGTGGTTCGAAGAGGAAACGGGGAGGGCAAGCGTTCGAGATGACAAAAATTATTCACAGTGCCAT
GGAATATGCGAACGACCAGCTGAAGGCCATTGTAGAATGGTCCAAAGAACAACGCCAAGATGCAAGCGTGACACGTGCGAAAGTCGTTTGA
Protein sequenceShow/hide protein sequence
MGTRSRRLSEGRAGSSGSKRKRGGQAFEMTKIIHSAMEYANDQLKAIVEWSKEQRQDASVTRAKVV