; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0012938 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012938
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:24231230..24232607
RNA-Seq ExpressionPI0012938
SyntenyPI0012938
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-4172.9Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+ WRDNPNLRWGND Q+  QA S S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKL
        T AISK+
Subjt:  TNAISKL

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-3970.09Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+ WRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKL
        T  ISK+
Subjt:  TNAISKL

KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-3971.15Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP+GNTYN+ WRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKL
        ISK+
Subjt:  ISKL

KAA0062012.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-3970.09Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN+ WRDNPNLRWGND Q+  QA S S+NQG+NL+D++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKL
        T AISK+
Subjt:  TNAISKL

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]1.6e-3970.09Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+ WRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKL
        T  ISK+
Subjt:  TNAISKL

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919107.5e-4070.09Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+ WRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKL
        T  ISK+
Subjt:  TNAISKL

A0A5A7UID2 Retrotransposon gag protein9.8e-4071.15Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP+GNTYN+ WRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKL
        ISK+
Subjt:  ISKL

A0A5A7V1C6 Retrotransposon gag protein5.8e-4070.09Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN+ WRDNPNLRWGND Q+  QA S S+NQG+NL+D++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKL
        T AISK+
Subjt:  TNAISKL

A0A5D3CRR8 Retrotransposon gag protein2.3e-4172.9Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+ WRDNPNLRWGND Q+  QA S S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKL
        T AISK+
Subjt:  TNAISKL

A0A5D3DCG3 Retrotransposon gag protein7.5e-4070.09Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+ WRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKL
        T  ISK+
Subjt:  TNAISKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCGTTGCCGGGGAGCGACGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCAGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTT
CACCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCCGTTGCCGGGGAGCGACGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCAGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTT
CACCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACTATAA
Protein sequenceShow/hide protein sequence
MSPLPGSDGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNASWRDNPNLRWGNDAQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTN
AISKL