CuGenDBv2

Gene ID	PI0012956
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Rep_fac-A_C domain-containing protein
Genome location	chr11:5499040..5501959
RNA-Seq Expression	PI0012956
Synteny	PI0012956
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008465398.1 PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo]

1.2e-78

95.51

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Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENGKPITTMCAVIAMDYTNFCYRVCSICERTLP NPSSSLCKFCN NAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYG
        HPFAA+TVSEIL GEMFRITISKPKNGNAQHSRVVQIVPLSS FQPAIIRLRELYG
Subjt:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYG

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

6.5e-80

84.62

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Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK
        HPFAA+ VSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K K
Subjt:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]

6.5e-80

84.62

Show/hide

Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK
        HPFAA+ VSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K K
Subjt:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK

XP_022985581.1 uncharacterized protein LOC111483608 isoform X3 [Cucurbita maxima]

7.2e-79

84.07

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Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN K ITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK
        HPFAA+ VSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K K
Subjt:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK

XP_023512879.1 uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]

4.2e-79

84.62

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Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNP SSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK
        HPFAA+ VSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K K
Subjt:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KEN7 Uncharacterized protein

8.5e-78

95.51

Show/hide

Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENGKPITTMCAV+AMDYTNFCYRVCSICERTLP NP SSLCKFCN NAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYG
        HPFAA+TVSEILEGEM RITISKPKNGNAQHSRVVQIVPLSS FQPAIIRLRELYG
Subjt:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYG

A0A1S3CNQ4 uncharacterized protein LOC103503028

5.9e-79

95.51

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Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENGKPITTMCAVIAMDYTNFCYRVCSICERTLP NPSSSLCKFCN NAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYG
        HPFAA+TVSEIL GEMFRITISKPKNGNAQHSRVVQIVPLSS FQPAIIRLRELYG
Subjt:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYG

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

3.1e-80

84.62

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Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK
        HPFAA+ VSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K K
Subjt:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

3.1e-80

84.62

Show/hide

Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK
        HPFAA+ VSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K K
Subjt:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

3.5e-79

84.07

Show/hide

Query:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN K ITTMCAVIAMD+T+FCYRVCSICERTLP+NP  SLCKFCN NAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK
        HPFAA+ VSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG     +  VS AVGNGQN     K K
Subjt:  HPFAAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.8e-43

54.97

Show/hide

Query:  TTMCAVIAMDYTNFCYRVCSICERTLPAN----PSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF
        T +C ++A+D T++CYRVCS C+R LP++     SSS CKFC        S   K ++R+LMSIATD  V+TVICFDR A VLFGCSADEFF F KL+P 
Subjt:  TTMCAVIAMDYTNFCYRVCSICERTLPAN----PSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF

Query:  AAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLREL
        AA  V+++ +GEM R+T+++P+N NAQH RV  +VPL SG QPAI+ LR++
Subjt:  AAKTVSEILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLREL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAAATGGTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATTACACCAATTTCTGTTACAGAGTTTGTTCTATCTGTGAGAGAACACTTCCTGCTAACCC
ATCTTCTTCTCTTTGCAAATTCTGCAACTTGAACGCCTTTAATCCCGGTTCTTCCTCCTCCAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTAC
AAACTGTAATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGCTAAAACTGTAAGTGAA
ATTCTGGAGGGAGAGATGTTTAGAATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCAGGTTTTCAACCAGC
AATTATTAGACTGAGGGAATTGTATGGGAGTAAATTCCATTTGATAATTATGGTTTCATTTGCTGTTGGTAATGGACAAAACAAGCAGTGGTTCCATAAAGTAAAAGAGA
TGTGA

mRNA sequence

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AACAAAAACACCCCTAGCGGTATAGAAATTTTCGTCCCCCCCCCCCCCGAAACAGTGTGCAGAACAGTGTTGTATTTTCAGTTTTCAGGATCGAAGGCAGTTTCCTTTAG
AGGAGTAATGGAAAATGGTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATTACACCAATTTCTGTTACAGAGTTTGTTCTATCTGTGAGAGAACACTTCCTG
CTAACCCATCTTCTTCTCTTTGCAAATTCTGCAACTTGAACGCCTTTAATCCCGGTTCTTCCTCCTCCAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAG
AAAGTACAAACTGTAATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGCTAAAACTGT
AAGTGAAATTCTGGAGGGAGAGATGTTTAGAATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCAGGTTTTC
AACCAGCAATTATTAGACTGAGGGAATTGTATGGGAGTAAATTCCATTTGATAATTATGGTTTCATTTGCTGTTGGTAATGGACAAAACAAGCAGTGGTTCCATAAAGTA
AAAGAGATGTGATGTGGGCACCTCAAAATAACCTAATCCCATCCCATCCCAACATTGTTTGCATTTTTGCTATCATTTAGAATGGACAATATTTTGTCATTTGATGTGAT
TTTGTGTGCAGTGGAGAGGATTATTGTAACATGAAAGGAAGAAGAAGGTTGGCAAAGTTTACCAATCTATATCGAAAAGTGGTGTATTTGTAATGAAATTTTAT

Protein sequence

Show/hide protein sequence

MENGKPITTMCAVIAMDYTNFCYRVCSICERTLPANPSSSLCKFCNLNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAKTVSE
ILEGEMFRITISKPKNGNAQHSRVVQIVPLSSGFQPAIIRLRELYGSKFHLIIMVSFAVGNGQNKQWFHKVKEM

PI0012956 (gene) of Melon (PI 482460) v1 genome