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PI0012972 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012972
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:22218553..22218825
RNA-Seq ExpressionPI0012972
SyntenyPI0012972
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035763.1 hypothetical protein E6C27_scaffold403G00380 [Cucumis melo var. makuwa]1.8e-1470.15Show/hide
Query:  MLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS
        MLKSS NQIK TLD+ T+NNEE D+DDF + R GRG++EEGLD N VVALQGQMT MNNLL+S+ +S
Subjt:  MLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]5.9e-1856.84Show/hide
Query:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGNR------RGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAI
        ME FYFGL+K T Q+A+IVF GGML+SSYNQIK  LDT  SN++EW ++ FG+R      +G RGR E+G+D + +VALQGQ+  M N+L+SMA+
Subjt:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGNR------RGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAI

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]4.4e-2161.11Show/hide
Query:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS
        ME FYFGL+K T Q  + +F+GGML+SSYNQIK TLD+ ++N++EWD+  FG+R   RGR++EGLDK+ VV LQGQM  MNNLL+SM +S
Subjt:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS

KGN53801.1 hypothetical protein Csa_014772 [Cucumis sativus]3.9e-1447.92Show/hide
Query:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGN------RRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS
        +E FYFGL++ T+Q  D VFIGGML+ S N IK TLD   SN++EW +++FG+       R  +GR+ +G + N ++ LQ Q+T MN LL+SMA+S
Subjt:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGN------RRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS

TYK29856.1 hypothetical protein E5676_scaffold208G001000 [Cucumis melo var. makuwa]2.0e-1367.16Show/hide
Query:  MLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS
        MLKSS NQIK +LD+ T+NNEE D+DDF + R GRG++EEGLD N VVALQGQM  MNNLL+S+ +S
Subjt:  MLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein2.1e-2161.11Show/hide
Query:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS
        ME FYFGL+K T Q  + +F+GGML+SSYNQIK TLD+ ++N++EWD+  FG+R   RGR++EGLDK+ VV LQGQM  MNNLL+SM +S
Subjt:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS

A0A0A0L0Y4 Uncharacterized protein1.9e-1447.92Show/hide
Query:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGN------RRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS
        +E FYFGL++ T+Q  D VFIGGML+ S N IK TLD   SN++EW +++FG+       R  +GR+ +G + N ++ LQ Q+T MN LL+SMA+S
Subjt:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGN------RRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS

A0A5A7SYS5 Uncharacterized protein8.6e-1570.15Show/hide
Query:  MLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS
        MLKSS NQIK TLD+ T+NNEE D+DDF + R GRG++EEGLD N VVALQGQMT MNNLL+S+ +S
Subjt:  MLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS

A0A5D3CC26 Uncharacterized protein2.8e-1856.84Show/hide
Query:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGNR------RGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAI
        ME FYFGL+K T Q+A+IVF GGML+SSYNQIK  LDT  SN++EW ++ FG+R      +G RGR E+G+D + +VALQGQ+  M N+L+SMA+
Subjt:  MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGNR------RGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAI

A0A5D3E1V8 Uncharacterized protein9.5e-1467.16Show/hide
Query:  MLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS
        MLKSS NQIK +LD+ T+NNEE D+DDF + R GRG++EEGLD N VVALQGQM  MNNLL+S+ +S
Subjt:  MLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCATTTTACTTTGGACTTAACAAGGGGACACGACAAACTGCTGACATTGTGTTTATAGGAGGTATGTTGAAAAGTTCATACAACCAGATCAAGATGACGTTGGA
TACAAGGACCAGTAATAATGAAGAATGGGATGAAGATGATTTTGGCAATCGCCGAGGAGGAAGAGGAAGAAGCGAGGAAGGATTGGATAAGAACACTGTGGTGGCGTTGC
AAGGACAAATGACTACGATGAACAATCTGCTGAAATCAATGGCGATATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCATTTTACTTTGGACTTAACAAGGGGACACGACAAACTGCTGACATTGTGTTTATAGGAGGTATGTTGAAAAGTTCATACAACCAGATCAAGATGACGTTGGA
TACAAGGACCAGTAATAATGAAGAATGGGATGAAGATGATTTTGGCAATCGCCGAGGAGGAAGAGGAAGAAGCGAGGAAGGATTGGATAAGAACACTGTGGTGGCGTTGC
AAGGACAAATGACTACGATGAACAATCTGCTGAAATCAATGGCGATATCGTAG
Protein sequenceShow/hide protein sequence
MEAFYFGLNKGTRQTADIVFIGGMLKSSYNQIKMTLDTRTSNNEEWDEDDFGNRRGGRGRSEEGLDKNTVVALQGQMTTMNNLLKSMAIS