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PI0013025 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013025
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:13867393..13874549
RNA-Seq ExpressionPI0013025
SyntenyPI0013025
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]6.2e-5673.76Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        T AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP ++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-5570.75Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSP
        T AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP ++EK     P
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSP

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-5567.74Show/hide
Query:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKC  ++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSPSQALVHKSKLKQ
        SK++GKGKLPAQPD+ANVSAISLRSGKIL+TP ++EK  E    + L+   + +Q
Subjt:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSPSQALVHKSKLKQ

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-5572.73Show/hide
Query:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSP
        SK++GKGKLPAQPDHANVSAISLRSGKIL+TP ++EK     P
Subjt:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSP

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-5674.47Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        T AISK++GKGKLPAQPDHANVSAISLRSGKIL+TP ++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein1.5e-5567.74Show/hide
Query:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKC  ++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSPSQALVHKSKLKQ
        SK++GKGKLPAQPD+ANVSAISLRSGKIL+TP ++EK  E    + L+   + +Q
Subjt:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSPSQALVHKSKLKQ

A0A5D3CB46 Retrotransposon gag protein6.7e-5672.73Show/hide
Query:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSP
        SK++GKGKLPAQPDHANVSAISLRSGKIL+TP ++EK     P
Subjt:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSP

A0A5D3CFE7 Retrotransposon gag protein1.0e-5674.47Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        T AISK++GKGKLPAQPDHANVSAISLRSGKIL+TP ++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

A0A5D3CRR8 Retrotransposon gag protein5.1e-5670.75Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSP
        T AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP ++EK     P
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSP

E5GBZ4 Retrotransposon gag protein3.0e-5673.76Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK
        T AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP ++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAACAACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCCGCACAAGCAACTT
CATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGA
AGAAAAGGATAATGAGCAAAGCCCCTCACAAGCCCTTGTACACAAAAGTAAGCTAAAACAAGCTTCCTGCGGCCAAAAACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAACAACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCCGCACAAGCAACTT
CATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGA
AGAAAAGGATAATGAGCAAAGCCCCTCACAAGCCCTTGTACACAAAAGTAAGCTAAAACAAGCTTCCTGCGGCCAAAAACTATGA
Protein sequenceShow/hide protein sequence
MAPLPGNNGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTN
AISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKDNEQSPSQALVHKSKLKQASCGQKL