CuGenDBv2

Gene ID	PI0013029
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr08:3852850..3854563
RNA-Seq Expression	PI0013029
Synteny	PI0013029
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]

1.2e-36

74.07

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Query:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE
        MS EE H SP EQVIEGP+TRGRKEQHSPTRRSKSKGP  REHVD RLTNLEQG+E+VQ +VGRL +NFEELVQENAEIT+ AKE++ED+GR+F++EL E
Subjt:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE

Query:  VASALKSL
        +AS + +L
Subjt:  VASALKSL

KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]

9.1e-37

74.07

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Query:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE
        MS EE H SP EQVIEGP+TRGRK+QHSPTRRSKSKGPT REHVD RLTNLE+G+E+VQ +VGRL +NFEELVQENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE

Query:  VASALKSL
        +AS + +L
Subjt:  VASALKSL

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]

3.5e-36

73.15

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Query:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE
        MS EE H SP EQVIEGP+TRGRKEQHSPTRRSKSKGP  REHVD RLTNLEQG+E+VQ +VGRL +NFEELVQENAEIT+ AKE++ED+GR+F++EL E
Subjt:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE

Query:  VASALKSL
        + S + +L
Subjt:  VASALKSL

TYK18079.1 uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa]

9.1e-37

74.07

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Query:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE
        MS EE H SP EQVIEGP+TRGRK+QHSPTRRSKSKGPT REHVD RLTNLE+G+E+VQ +VGRL +NFEELVQENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE

Query:  VASALKSL
        +AS + +L
Subjt:  VASALKSL

XP_008446938.1 PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]

2.7e-36

74.07

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Query:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE
        MS EE H SP EQVIEGP+TRGRKEQHSPTRRSKSKGP  REHVD RLTNLEQG+E+VQ +VGRL +NFEELV ENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE

Query:  VASALKSL
        +AS + +L
Subjt:  VASALKSL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BG92 uncharacterized protein LOC103489499

1.3e-36

74.07

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Query:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE
        MS EE H SP EQVIEGP+TRGRKEQHSPTRRSKSKGP  REHVD RLTNLEQG+E+VQ +VGRL +NFEELV ENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE

Query:  VASALKSL
        +AS + +L
Subjt:  VASALKSL

A0A5A7TAA5 Uncharacterized protein

5.8e-37

74.07

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Query:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE
        MS EE H SP EQVIEGP+TRGRKEQHSPTRRSKSKGP  REHVD RLTNLEQG+E+VQ +VGRL +NFEELVQENAEIT+ AKE++ED+GR+F++EL E
Subjt:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE

Query:  VASALKSL
        +AS + +L
Subjt:  VASALKSL

A0A5A7TFP3 Retrotrans_gag domain-containing protein

4.4e-37

74.07

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Query:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE
        MS EE H SP EQVIEGP+TRGRK+QHSPTRRSKSKGPT REHVD RLTNLE+G+E+VQ +VGRL +NFEELVQENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE

Query:  VASALKSL
        +AS + +L
Subjt:  VASALKSL

A0A5A7VEX8 Polyprotein

1.7e-36

73.15

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Query:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE
        MS EE H SP EQVIEGP+TRGRKEQHSPTRRSKSKGP  REHVD RLTNLEQG+E+VQ +VGRL +NFEELVQENAEIT+ AKE++ED+GR+F++EL E
Subjt:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE

Query:  VASALKSL
        + S + +L
Subjt:  VASALKSL

A0A5D3D3V4 Retrotrans_gag domain-containing protein

4.4e-37

74.07

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Query:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE
        MS EE H SP EQVIEGP+TRGRK+QHSPTRRSKSKGPT REHVD RLTNLE+G+E+VQ +VGRL +NFEELVQENAEIT+ AKE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNE

Query:  VASALKSL
        +AS + +L
Subjt:  VASALKSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGACAGAGGAAAGGCATGTTTCACCCGACGAACAAGTCATTGAAGGACCTATTACTCGGGGAAGGAAAGAACAACATTCTCCAACCCGACGCTCGAAGTCTAAGGG
ACCGACTGCGAGAGAGCATGTCGATAACCGCCTTACCAACCTCGAGCAAGGATTGGAGGAGGTTCAATTCTCGGTTGGTAGGCTGGGTGACAACTTTGAAGAATTGGTCC
AGGAGAATGCTGAAATTACAACCGCTGCAAAAGAGCTCGTTGAGGATCTGGGACGATCGTTTAGAAAGGAACTGAACGAGGTGGCATCGGCGTTAAAATCACTTATTGAA
GTCCCTTACAATTCTAGATGGAGGAATGACAACAATACCGTTGAAGAAGGGAAAACCCGCTGTGATGCTCTCAGCAACACAGTTCAAGAGGGCAGTCACAAAAAGTGA

mRNA sequence

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Protein sequence

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MSTEERHVSPDEQVIEGPITRGRKEQHSPTRRSKSKGPTAREHVDNRLTNLEQGLEEVQFSVGRLGDNFEELVQENAEITTAAKELVEDLGRSFRKELNEVASALKSLIE
VPYNSRWRNDNNTVEEGKTRCDALSNTVQEGSHKK

PI0013029 (gene) of Melon (PI 482460) v1 genome