; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0013051 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013051
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr06:17693892..17694287
RNA-Seq ExpressionPI0013051
SyntenyPI0013051
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK05725.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]3.5e-4379.17Show/hide
Query:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA
        MAIFSDFLERSVEIFMDDFSVFG+SF+E + NLEEVLEKCEETRLVLNW+KCHFMV+EGIVLG+KI EAGL       DVV+KLP  T VKPL SFLGHA
Subjt:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA

Query:  GSYRRFIKGFSQIPKLLKNL
        G YRRFIKGFSQI K L NL
Subjt:  GSYRRFIKGFSQIPKLLKNL

WP_217833188.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]3.7e-4573.02Show/hide
Query:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA
        MAIFSD+LE+SVE+FMDDFSVFG S+ ECL NLE VL++CE+T LVLNWEKCHFMV EGIVLGHKIS+ GLEVD ++ID ++KLP+ T+VK LRSFLGHA
Subjt:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA

Query:  GSYRRFIKGFSQIPKLLKNLLCAMRQ
        G YRRFIKGFSQ+ K L  LL A R+
Subjt:  GSYRRFIKGFSQIPKLLKNLLCAMRQ

XP_021994444.1 uncharacterized protein LOC110891080 [Helianthus annuus]3.5e-4370.25Show/hide
Query:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA
        +AIF D +E S+E+FMDDFSVFG+SF +CLGNL+ +L +CEET LVLNWEKCHFMVKEG+VLGHKISEAGLEVDP+K+D++SKLP  T V+ +RSFLGHA
Subjt:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA

Query:  GSYRRFIKGFSQIPKLLKNLL
        G YRRFIK FS+I + +  LL
Subjt:  GSYRRFIKGFSQIPKLLKNLL

XP_022003438.1 uncharacterized protein LOC110900888 [Helianthus annuus]3.5e-4370.25Show/hide
Query:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA
        +AIF D +E S+E+FMDDFSVFG+SF +CLGNL+ +L +CEET LVLNWEKCHFMVKEG+VLGHKISEAGLEVDP+K+D++SKLP  T V+ +RSFLGHA
Subjt:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA

Query:  GSYRRFIKGFSQIPKLLKNLL
        G YRRFIK FS+I + +  LL
Subjt:  GSYRRFIKGFSQIPKLLKNLL

XP_038894606.1 uncharacterized mitochondrial protein AtMg00860-like [Benincasa hispida]1.5e-4370.4Show/hide
Query:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA
        MAIFSDFLE++VE+FM+DFSVFG+SF+ CL NLE +L +CEET LVLNW+KCHFM+ EGIVLGHK+S+AGLEVD +KIDV++KLP  ++VK LRSFLGH 
Subjt:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA

Query:  GSYRRFIKGFSQIPKLLKNLLCAMR
        G YRRF+KGFSQI + L  LL A R
Subjt:  GSYRRFIKGFSQIPKLLKNLLCAMR

TrEMBL top hitse value%identityAlignment
A0A2U1NRI2 Reverse transcriptase3.7e-4371.07Show/hide
Query:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA
        +AIF D +E SVE+FMDDFSVFGNSF +CL NL+++L++CE+T LVLNWEKCHFMVKEGIVLGHK+S AGLEVD +K+DV+SKLP  T+VK +RSFLGHA
Subjt:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA

Query:  GSYRRFIKGFSQIPKLLKNLL
        G YRRFIK FS+I + L  LL
Subjt:  GSYRRFIKGFSQIPKLLKNLL

A0A5D3C2W5 Retrovirus-related Pol polyprotein from transposon 17.61.7e-4379.17Show/hide
Query:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA
        MAIFSDFLERSVEIFMDDFSVFG+SF+E + NLEEVLEKCEETRLVLNW+KCHFMV+EGIVLG+KI EAGL       DVV+KLP  T VKPL SFLGHA
Subjt:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA

Query:  GSYRRFIKGFSQIPKLLKNL
        G YRRFIKGFSQI K L NL
Subjt:  GSYRRFIKGFSQIPKLLKNL

A0A6P6SU28 Reverse transcriptase1.1e-4270.49Show/hide
Query:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA
        MAIFSD++E+ +EIFMDDFSV+G+SF +CL NLE +L++CEET LVLNWEKCHFMVKEGIVLGHKIS  G+EVD +KI+V+ KLP  ++VK +RSFLGHA
Subjt:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA

Query:  GSYRRFIKGFSQIPKLLKNLLC
        G YRRFIK FS+I K L +LLC
Subjt:  GSYRRFIKGFSQIPKLLKNLLC

A0A6P6TF62 Reverse transcriptase1.8e-4270.49Show/hide
Query:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA
        MAIFSD++E+ +EIFMDDFSV+G+SF  CL NLE +L++CEET LVLNWEKCHFMVKEGIVLGHKIS  G+EVD +KI+V+ KLP  ++VK +RSFLGHA
Subjt:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA

Query:  GSYRRFIKGFSQIPKLLKNLLC
        G YRRFIK FS+I K L +LLC
Subjt:  GSYRRFIKGFSQIPKLLKNLLC

A0A6P6X9H2 Reverse transcriptase1.8e-4270.49Show/hide
Query:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA
        MAIFSD++E+ +EIFMDDFSV+G+SF  CL NLE +L++CEET LVLNWEKCHFMVKEGIVLGHKIS  G+EVD +KI+V+ KLP  ++VK +RSFLGHA
Subjt:  MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHA

Query:  GSYRRFIKGFSQIPKLLKNLLC
        G YRRFIK FS+I K L +LLC
Subjt:  GSYRRFIKGFSQIPKLLKNLLC

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.69.2e-1535.29Show/hide
Query:  IFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGS
        I    L +   +++DD  VF  S  E L +L  V EK  +  L L  +KC F+ +E   LGH ++  G++ +P KI+ + K P  T  K +++FLG  G 
Subjt:  IFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGS

Query:  YRRFIKGFSQIPKLLKNLL
        YR+FI  F+ I K +   L
Subjt:  YRRFIKGFSQIPKLLKNLL

P10394 Retrovirus-related Pol polyprotein from transposon 4121.2e-1438.46Show/hide
Query:  FSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGSY
        FS        ++MDD  V G S K  L NL EV  KC E  L L+ EKC F + E   LGHK ++ G+  D  K DV+   P   D    R F+     Y
Subjt:  FSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGSY

Query:  RRFIKGFSQIPKLLKNL
        RRFIK F+   + +  L
Subjt:  RRFIKGFSQIPKLLKNL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy3.7e-0828.7Show/hide
Query:  IFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGSYRRFIKGFSQI
        +++DD  +F  +  + + +++ VL+   +  + ++ EK  F  +    LG  +S+ G + DP K+  + + P    V  +RSFLG A  YR FIK F+ I
Subjt:  IFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGSYRRFIKGFSQI

Query:  PKLLKNLL
         + + ++L
Subjt:  PKLLKNLL

P20825 Retrovirus-related Pol polyprotein from transposon 2971.7e-1331.93Show/hide
Query:  IFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGS
        I    L +   +++DD  +F  S  E L +++ V  K  +  L L  +KC F+ KE   LGH ++  G++ +P K+  +   P  T  K +R+FLG  G 
Subjt:  IFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGS

Query:  YRRFIKGFSQIPKLLKNLL
        YR+FI  ++ I K + + L
Subjt:  YRRFIKGFSQIPKLLKNLL

P92523 Uncharacterized mitochondrial protein AtMg008606.4e-0835.11Show/hide
Query:  LGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHK--ISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGSYRRFIKGFSQIPKLLKNLL
        + +L  VL+  E+ +   N +KC F   +   LGH+  IS  G+  DP+K++ +   P   +   LR FLG  G YRRF+K + +I + L  LL
Subjt:  LGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHK--ISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGSYRRFIKGFSQIPKLLKNLL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.5e-0935.11Show/hide
Query:  LGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHK--ISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGSYRRFIKGFSQIPKLLKNLL
        + +L  VL+  E+ +   N +KC F   +   LGH+  IS  G+  DP+K++ +   P   +   LR FLG  G YRRF+K + +I + L  LL
Subjt:  LGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHK--ISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGSYRRFIKGFSQIPKLLKNLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATCTTCTCAGACTTTCTAGAGAGATCAGTTGAGATTTTCATGGATGATTTTTCTGTATTTGGAAATTCCTTCAAAGAATGTCTGGGCAACTTAGAAGAAGTTTT
GGAGAAATGTGAAGAGACACGACTCGTTTTGAACTGGGAGAAGTGTCACTTCATGGTTAAAGAAGGAATTGTGCTTGGGCACAAGATCTCCGAGGCGGGATTAGAAGTGG
ACCCTTCGAAAATTGATGTGGTTAGCAAGCTACCATCGTTTACTGATGTCAAACCCTTGAGAAGTTTCTTAGGCCATGCTGGTTCATATAGAAGGTTCATCAAGGGATTC
TCTCAAATTCCAAAGCTGCTCAAGAATCTACTATGCGCTATGCGCCAATCAACCATATCATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATCTTCTCAGACTTTCTAGAGAGATCAGTTGAGATTTTCATGGATGATTTTTCTGTATTTGGAAATTCCTTCAAAGAATGTCTGGGCAACTTAGAAGAAGTTTT
GGAGAAATGTGAAGAGACACGACTCGTTTTGAACTGGGAGAAGTGTCACTTCATGGTTAAAGAAGGAATTGTGCTTGGGCACAAGATCTCCGAGGCGGGATTAGAAGTGG
ACCCTTCGAAAATTGATGTGGTTAGCAAGCTACCATCGTTTACTGATGTCAAACCCTTGAGAAGTTTCTTAGGCCATGCTGGTTCATATAGAAGGTTCATCAAGGGATTC
TCTCAAATTCCAAAGCTGCTCAAGAATCTACTATGCGCTATGCGCCAATCAACCATATCATTTTGA
Protein sequenceShow/hide protein sequence
MAIFSDFLERSVEIFMDDFSVFGNSFKECLGNLEEVLEKCEETRLVLNWEKCHFMVKEGIVLGHKISEAGLEVDPSKIDVVSKLPSFTDVKPLRSFLGHAGSYRRFIKGF
SQIPKLLKNLLCAMRQSTISF