CuGenDBv2

Gene ID	PI0013102
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr09:21766868..21771535
RNA-Seq Expression	PI0013102
Synteny	PI0013102
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]

4.6e-44

63.35

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Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVD RLTNLEQG+E+VQ  VGRL  NFEELVQENAEIT+  KE++ED+GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE

Query:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL
        +AS    LK+ +EGEL  LH++  S + ++D +  ECRSKH+     STST   T   S +
Subjt:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL

KAA0040659.1 uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]

1.0e-43

63.35

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Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVD RLTNLEQG+E+VQ  VGRL   FEELVQENAEIT+  KE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE

Query:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL
        +AS    LK+ +EGEL +LH++  S + ++D +  ECRSKH+     STST   T   S +
Subjt:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]

1.4e-43

62.73

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Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVD RLTNLEQG+E+VQ  VGRL  NFEELVQENAEIT+  KE++ED+GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE

Query:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL
        + S    LK+ +EGEL  LH++  S + ++D +  ECRSKH+     STST   T   S +
Subjt:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL

TYK02748.1 uncharacterized protein E5676_scaffold145G00020 [Cucumis melo var. makuwa]

3.9e-43

62.73

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Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE
        MS EE H SP EQVIEGPVTRGRKEQHS TRRSKSKGPA REHV+ RLTNLEQG+E+VQ  VGRL +NFEELVQENAEIT+  KE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE

Query:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL
        +AS    LK+ +EGEL +L+++  SL+ ++D +  ECRSKH+     STST   T   S +
Subjt:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL

XP_008446938.1 PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]

3.9e-43

58.76

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Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVD RLTNLEQG+E+VQ  VGRL  NFEELV ENAEIT+  KE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE

Query:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV-----------TEASTSTGRVTRERSQLGKRRSTL
        +AS    LK+ +EGEL  LH++  S + ++D +  ECRSKH+           T + TS  +V +     G R ST+
Subjt:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV-----------TEASTSTGRVTRERSQLGKRRSTL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TAA5 Uncharacterized protein

2.2e-44

63.35

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Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVD RLTNLEQG+E+VQ  VGRL  NFEELVQENAEIT+  KE++ED+GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE

Query:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL
        +AS    LK+ +EGEL  LH++  S + ++D +  ECRSKH+     STST   T   S +
Subjt:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL

A0A5A7TCV2 Integrase catalytic domain-containing protein

1.9e-43

62.73

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Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE
        MS EE H SP EQVIEGPVTRGRKEQHS TRRSKSKGPA REHV+ RLTNLEQG+E+VQ  VGRL +NFEELVQENAEIT+  KE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE

Query:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL
        +AS    LK+ +EGEL +L+++  SL+ ++D +  ECRSKH+     STST   T   S +
Subjt:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL

A0A5A7THC0 Reverse transcriptase domain-containing protein

5.0e-44

63.35

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Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVD RLTNLEQG+E+VQ  VGRL   FEELVQENAEIT+  KE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE

Query:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL
        +AS    LK+ +EGEL +LH++  S + ++D +  ECRSKH+     STST   T   S +
Subjt:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL

A0A5A7VEX8 Polyprotein

6.5e-44

62.73

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Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE
        MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVD RLTNLEQG+E+VQ  VGRL  NFEELVQENAEIT+  KE++ED+GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE

Query:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL
        + S    LK+ +EGEL  LH++  S + ++D +  ECRSKH+     STST   T   S +
Subjt:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL

A0A5D3BUU0 Integrase catalytic domain-containing protein

1.9e-43

62.73

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Query:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE
        MS EE H SP EQVIEGPVTRGRKEQHS TRRSKSKGPA REHV+ RLTNLEQG+E+VQ  VGRL +NFEELVQENAEIT+  KE++ED+GR+F+KEL E
Subjt:  MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNE

Query:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL
        +AS    LK+ +EGEL +L+++  SL+ ++D +  ECRSKH+     STST   T   S +
Subjt:  VAS---ALKSLIEGELRELHSRYNSLDAKIDFVYSECRSKHV--TEASTSTGRVTRERSQL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGACGGAGGAAAGACATGTATCACCTGAGGAACAAGTCATTGAAGGACCCGTTACTCGGGGAAGGAAAGAGCAACATTCTCCAACCCGACGCTCGAAGTCTAAGGG
ACCGGCTGCAAGAGAGCATGTCGATGCCCGCCTTACCAACCTCGAGCAAGGTCTGGAGGAGGTTCAATTCACGGTTGGTAGGTTGGGCAATAACTTTGAAGAGCTGGTCC
AGGAGAATGCTGAAATTACAACTGCTGTAAAGGAGCTTGTCGAGGATCTGGGACGATCGTTTAAAAAGGAACTAAACGAAGTCGCATCGGCATTAAAGTCACTCATTGAA
GGTGAGTTACGGGAACTCCATTCTAGATATAATTCCCTTGATGCCAAAATAGACTTTGTCTATTCCGAATGTCGTTCCAAGCACGTTACCGAAGCAAGTACTTCGACCGG
ACGGGTTACCAGAGAGCGAAGCCAGTTGGGAAAGAGAAGATCTACTCTGGCAATTTCACGAAGAAATAGAAAGATTCAAAGAAAACGCAACGGGGACGTTGCGAAATTGA
GTGGGGGTGGGTGTCACGCCCAAAATTTTACCCCATAA

mRNA sequence

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Protein sequence

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MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDARLTNLEQGLEEVQFTVGRLGNNFEELVQENAEITTAVKELVEDLGRSFKKELNEVASALKSLIE
GELRELHSRYNSLDAKIDFVYSECRSKHVTEASTSTGRVTRERSQLGKRRSTLAISRRNRKIQRKRNGDVAKLSGGGCHAQNFTP

PI0013102 (gene) of Melon (PI 482460) v1 genome