; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0013104 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013104
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr02:11763777..11764567
RNA-Seq ExpressionPI0013104
SyntenyPI0013104
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.3e-6165.97Show/hide
Query:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ
        MTTLLTSFVQG  +K+ KCGVC L+GHPNDKC +++E+ N++RKYDP+GNTYN+ WRDNPNLRWGND Q+  QA  +S+NQG+NLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSKEINTKGRRTD
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGK L TP + E+KV S  + L  +N+ KEE +E N S S+SK  N K  R D
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSKEINTKGRRTD

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-6066.3Show/hide
Query:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ
        MTTLLTSFVQG  +K+ KCGVCGL+GHPNDKC +++E+ N++RKYDPHGNTYN+ WRDNPNLRWGND Q+  QA S+S+NQG+NLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGK L TP + E+K  S P+ L  +N+ KEE +E N S  +SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-6167.22Show/hide
Query:  TTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQN
        TTLLTSFVQG  +K+ KCGVCGL+GH N+KC +++E+ N++R+YDPH NTYN+ WRDNPNLRWGND Q+  QA S+S+NQG+NLED++K LATNT+SFQ 
Subjt:  TTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQN

Query:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK
        EMKQQM+QLT AISK++GKGKLPAQ DHANVSAISLRSGK L TP + E+KV S P+ L  +N+ KEE +E N S S+SK
Subjt:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.6e-6264.95Show/hide
Query:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ
        MTTLLTSFVQG   K+ KCGVCGL+GHPNDKC  ++E+ N++R+YDPH NTYN+ WRDN NLRWGND Q+  QA S+S+NQG+NLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSKEINTKGRRTDGDV
         +MKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGK L TP + E+K+ S P+ L  +N+ KEE ++      S KE NT+G RT GD+
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSKEINTKGRRTDGDV

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]1.8e-6166.85Show/hide
Query:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ
        MTTLLTSFVQG  +K+ KCGVCGL+G+PNDKC  ++E+ N++R+YDPHGNTYN  WRDNPNLRWGND Q+  QA  +S+NQG+NLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGK L TP + E+KV S  + L  +N+ KEE +E N+SSS+SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032918.5e-6266.85Show/hide
Query:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ
        MTTLLTSFVQG  +K+ KCGVCGL+G+PNDKC  ++E+ N++R+YDPHGNTYN  WRDNPNLRWGND Q+  QA  +S+NQG+NLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGK L TP + E+KV S  + L  +N+ KEE +E N+SSS+SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK

A0A5A7VQ60 Retrotransposon gag protein2.5e-6167.22Show/hide
Query:  TTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQN
        TTLLTSFVQG  +K+ KCGVCGL+GH N+KC +++E+ N++R+YDPH NTYN+ WRDNPNLRWGND Q+  QA S+S+NQG+NLED++K LATNT+SFQ 
Subjt:  TTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQN

Query:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK
        EMKQQM+QLT AISK++GKGKLPAQ DHANVSAISLRSGK L TP + E+KV S P+ L  +N+ KEE +E N S S+SK
Subjt:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK

A0A5D3CB46 Retrotransposon gag protein2.2e-6264.95Show/hide
Query:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ
        MTTLLTSFVQG   K+ KCGVCGL+GHPNDKC  ++E+ N++R+YDPH NTYN+ WRDN NLRWGND Q+  QA S+S+NQG+NLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSKEINTKGRRTDGDV
         +MKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGK L TP + E+K+ S P+ L  +N+ KEE ++      S KE NT+G RT GD+
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSKEINTKGRRTDGDV

A0A5D3CRR8 Retrotransposon gag protein5.5e-6166.3Show/hide
Query:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ
        MTTLLTSFVQG  +K+ KCGVCGL+GHPNDKC +++E+ N++RKYDPHGNTYN+ WRDNPNLRWGND Q+  QA S+S+NQG+NLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGK L TP + E+K  S P+ L  +N+ KEE +E N S  +SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSK

E5GBZ4 Retrotransposon gag protein6.5e-6265.97Show/hide
Query:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ
        MTTLLTSFVQG  +K+ KCGVC L+GHPNDKC +++E+ N++RKYDP+GNTYN+ WRDNPNLRWGND Q+  QA  +S+NQG+NLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSKEINTKGRRTD
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGK L TP + E+KV S  + L  +N+ KEE +E N S S+SK  N K  R D
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNASSSSSKEINTKGRRTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTAAAAATTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCTCGACCTAATGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGATTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGTTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTA
ACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAACCCTGCAAACCCCTCC
AAGCGAAGAAAAGGTACCATCTAACCCTATCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATCTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGAAATAAACA
CCAAAGGAAGAAGAACTGATGGAGATGTTCAGGAAATTGCAAATCAACCTACCTCTGCTCGATGCGTGTTCGCACTAGATGTAGCAATGAGTATTAAGGAAGAGAGTTGT
CGTACCCAAGGGAGCGAACTGAGTACTTCTAAACTTGCTTTAGGTTTATGGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTAAAAATTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCTCGACCTAATGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGATTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGTTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTA
ACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAACCCTGCAAACCCCTCC
AAGCGAAGAAAAGGTACCATCTAACCCTATCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATCTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGAAATAAACA
CCAAAGGAAGAAGAACTGATGGAGATGTTCAGGAAATTGCAAATCAACCTACCTCTGCTCGATGCGTGTTCGCACTAGATGTAGCAATGAGTATTAAGGAAGAGAGTTGT
CGTACCCAAGGGAGCGAACTGAGTACTTCTAAACTTGCTTTAGGTTTATGGAAGTAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKIAKCGVCGLIGHPNDKCLDLMEEANVIRKYDPHGNTYNADWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKVLATNTISFQNEMKQQMSQL
TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPSEEKVPSNPILLVDENKKKEENLENNASSSSSKEINTKGRRTDGDVQEIANQPTSARCVFALDVAMSIKEESC
RTQGSELSTSKLALGLWK