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PI0013108 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013108
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr11:15309679..15310493
RNA-Seq ExpressionPI0013108
SyntenyPI0013108
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]4.0e-5271.7Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV
        RGR +STSSKG R SSS N  PSPMSA QY MDLGFT VTRS++RLS I I SP ESSTPPRPS NL+RPSGGV QMRP AS  SN ESSTP TTYSQ V
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTR
          +KRF+PRPEIK+YF+K + +YDPIIEP+YQSLTL+E VSKI P+ FNFLPE L+K +
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]6.1e-5373.25Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV
        RGR +STSSKG+RLSSS N APSPMSADQYAMDLGFT VTRS++RLSGI I  P ESSTPPRPSANL+RP G V QM+P AS  SN +SSTP TTYSQ V
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRK
         P+KRF+PRP+IK YF+K + +YDP IE +YQSLTL+E VSKI PE FNFLPE LRK
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.2e-5874.12Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV
        RGR +STSSKG+R  SS N APSP+SADQYAMDLGFTTVTR  +R  GI I SP ESSTPPRPS NL+RPS GV QMRP AS  SN ESSTP TTYSQ V
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTRKFYEFILVDTK
         P+KRF+PRPEIK+YF+K + +YDPIIE +YQSLT +ETVSKI PE FNFL E LRKTRKFYEFIL DTK
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTRKFYEFILVDTK

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]3.8e-4773.72Show/hide
Query:  MSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTVAPEKRFIPRPEIKTYFKKQVAIYD
        MSADQYAMDLGFTTVTRS++R S IRIES  ESSTPPRPSANL+RP GG  QMRP AS  SN ESSTP TTYSQTV P+KRF+PRPEIK+YF+K + +YD
Subjt:  MSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTVAPEKRFIPRPEIKTYFKKQVAIYD

Query:  PIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTRKF
         IIEP+YQS+TL++TVSKI  + FN LPE LRKTR F
Subjt:  PIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTRKF

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]4.4e-5173.2Show/hide
Query:  RVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTVAP
        R +STSS+G+R SSS N APSPMSADQYAMDLGFTTVTRS+AR S I+I SP +SSTPPR SANL+RPS  V QMRPLAS LSN ESSTP TTYSQ + P
Subjt:  RVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTVAP

Query:  EKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYL
        +KRF+PR EIK+YF+K V +YD IIEP+YQSLTL+ETVSKI P+ FNFLP+ L
Subjt:  EKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYL

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein1.1e-5874.12Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV
        RGR +STSSKG+R  SS N APSP+SADQYAMDLGFTTVTR  +R  GI I SP ESSTPPRPS NL+RPS GV QMRP AS  SN ESSTP TTYSQ V
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTRKFYEFILVDTK
         P+KRF+PRPEIK+YF+K + +YDPIIE +YQSLT +ETVSKI PE FNFL E LRKTRKFYEFIL DTK
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTRKFYEFILVDTK

A0A5D3BM67 Uncharacterized protein1.9e-4773.72Show/hide
Query:  MSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTVAPEKRFIPRPEIKTYFKKQVAIYD
        MSADQYAMDLGFTTVTRS++R S IRIES  ESSTPPRPSANL+RP GG  QMRP AS  SN ESSTP TTYSQTV P+KRF+PRPEIK+YF+K + +YD
Subjt:  MSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTVAPEKRFIPRPEIKTYFKKQVAIYD

Query:  PIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTRKF
         IIEP+YQS+TL++TVSKI  + FN LPE LRKTR F
Subjt:  PIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTRKF

A0A5D3DHH1 Uncharacterized protein3.0e-4570.32Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESST-PLTTYSQT
        RGR +STSSKG+R SSS N  PS +SA QYA+DLGFT VTRS++RL GI I S  ESSTP RPSANL+RPSG V QMR LAS  SNMESST P TTYSQ 
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESST-PLTTYSQT

Query:  VAPEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDE-TVSKISPEGFNFLPE
        V P+KRF+PRPE KTYFKK + +Y P IE +YQ+LTL+E TVSKI P+GFNFLPE
Subjt:  VAPEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDE-TVSKISPEGFNFLPE

A0A5D3E4J4 Uncharacterized protein3.0e-5373.25Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV
        RGR +STSSKG+RLSSS N APSPMSADQYAMDLGFT VTRS++RLSGI I  P ESSTPPRPSANL+RP G V QM+P AS  SN +SSTP TTYSQ V
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRK
         P+KRF+PRP+IK YF+K + +YDP IE +YQSLTL+E VSKI PE FNFLPE LRK
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRK

E5GCE6 Uncharacterized protein1.9e-5271.7Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV
        RGR +STSSKG R SSS N  PSPMSA QY MDLGFT VTRS++RLS I I SP ESSTPPRPS NL+RPSGGV QMRP AS  SN ESSTP TTYSQ V
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTR
          +KRF+PRPEIK+YF+K + +YDPIIEP+YQSLTL+E VSKI P+ FNFLPE L+K +
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATAGTTCGTGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACCAAATCCTGCACCCTCACCCATGAGTGCAGATCAATATGC
AATGGATTTAGGGTTTACTACGGTAACCCGATCTAAGGCAAGATTGTCCGGCATACGGATTGAATCTCCCATGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAATCTTG
TCCGCCCTTCTGGCGGAGTAACTCAAATGAGGCCTCTTGCCTCTTCTTTATCAAATATGGAGTCATCCACTCCTCTCACAACATATTCTCAGACCGTCGCTCCAGAAAAA
CGGTTCATACCAAGGCCCGAGATAAAAACCTATTTTAAAAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAAAATATCAAAGTCTCACTCTCGATGAGACAGTTTC
AAAAATCTCCCCTGAGGGCTTTAATTTCCTTCCAGAATACCTCAGAAAAACCAGAAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTATAGAAATAACTCATGTAC
CTGACAAAAACGACCCTTCAAAAATCGAACCATTCTTGGTTCATATCCTTTTGCCAAAACGCCTACAAAATAAATTTTCCGCTATGGTTTATCCAATGGTGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCATAGTTCGTGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACCAAATCCTGCACCCTCACCCATGAGTGCAGATCAATATGC
AATGGATTTAGGGTTTACTACGGTAACCCGATCTAAGGCAAGATTGTCCGGCATACGGATTGAATCTCCCATGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAATCTTG
TCCGCCCTTCTGGCGGAGTAACTCAAATGAGGCCTCTTGCCTCTTCTTTATCAAATATGGAGTCATCCACTCCTCTCACAACATATTCTCAGACCGTCGCTCCAGAAAAA
CGGTTCATACCAAGGCCCGAGATAAAAACCTATTTTAAAAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAAAATATCAAAGTCTCACTCTCGATGAGACAGTTTC
AAAAATCTCCCCTGAGGGCTTTAATTTCCTTCCAGAATACCTCAGAAAAACCAGAAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTATAGAAATAACTCATGTAC
CTGACAAAAACGACCCTTCAAAAATCGAACCATTCTTGGTTCATATCCTTTTGCCAAAACGCCTACAAAATAAATTTTCCGCTATGGTTTATCCAATGGTGGAATAA
Protein sequenceShow/hide protein sequence
MSIVRGRGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPMESSTPPRPSANLVRPSGGVTQMRPLASSLSNMESSTPLTTYSQTVAPEK
RFIPRPEIKTYFKKQVAIYDPIIEPKYQSLTLDETVSKISPEGFNFLPEYLRKTRKFYEFILVDTKSIEITHVPDKNDPSKIEPFLVHILLPKRLQNKFSAMVYPMVE