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PI0013112 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013112
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr12:15064664..15065981
RNA-Seq ExpressionPI0013112
SyntenyPI0013112
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]1.4e-4945.88Show/hide
Query:  GKQDEFTPVTRKKRELVSVKDKGKGK-------------------------------------------------------KTRVREGNFNSVSTRFGDS
        GK DEFT VTRKK ELVS++D+GK                                                         +TRVREGNF+SVS RF +S
Subjt:  GKQDEFTPVTRKKRELVSVKDKGKGK-------------------------------------------------------KTRVREGNFNSVSTRFGDS

Query:  WDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS---------------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGN
        WDYS SYS+SGVGRIWVMWK++RF F+  V++EQFV+                                 VEITS WS P VVM DFNAIRVHS+A  G+
Subjt:  WDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS---------------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGN

Query:  LVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVNEQWLAT
         + G++E+F+ AIR+ADLVEPSVQGNWFTW SKV+GSG L RLD +LVN+ WL+T
Subjt:  LVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVNEQWLAT

KAA0046247.1 uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa]5.0e-5041.54Show/hide
Query:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLA------QGESKVQQEATVSEAG-------------------------------------------
        ME WTE+G+A++ASA+GKP+SLD ATKERRRLS A      +  S +  E TVS  G                                           
Subjt:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLA------QGESKVQQEATVSEAG-------------------------------------------

Query:  -------------------------------------PSKRWGKQDEFTPVTRKKRELVSVKDKGK-----------------GKK--------------
                                               K  GK DEFT VTR+K ELVSV+D+GK                 G K              
Subjt:  -------------------------------------PSKRWGKQDEFTPVTRKKRELVSVKDKGK-----------------GKK--------------

Query:  ------TRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVSVEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEF
              TRVREGNF+SVS RF +SWDYS SYS+SGVGRIWVMWK++RF F+ +V++EQF++VEITS WS P VVMGDFNAIRV+S+A GG+ + G++E+F
Subjt:  ------TRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVSVEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEF

Query:  DFAIREADLVEPSVQGNWFTWMSKV
        D AIR+ DLVEP VQGN F   SKV
Subjt:  DFAIREADLVEPSVQGNWFTWMSKV

KAA0049770.1 hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa]5.3e-5236.41Show/hide
Query:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLA------QGESKVQQEATVSEAG-------------------------------------------
        M+ WTE+G+A++AS +GKP+SLD A K+R RLS A      +G S +  E TVS  G                                           
Subjt:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLA------QGESKVQQEATVSEAG-------------------------------------------

Query:  -------------------------------------PSKRWGKQDEFTPVTRKKRELVSVKDKGKGK--------------------------------
                                               K  GK D+FT VTRKK ELVSV+D+GK                                  
Subjt:  -------------------------------------PSKRWGKQDEFTPVTRKKRELVSVKDKGKGK--------------------------------

Query:  --------------------------------KTRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS------------
                                        +TRVREGNF SVS RFG+SWDYS SYS+SGVGRIWVMWK++RF F+  V++EQFV+            
Subjt:  --------------------------------KTRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS------------

Query:  ---------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVN
                             VEITS WS P VVMGDFNAIRVHS+A GG+ + G++E+FD AIR+ADL+EPSVQGNWFTW SKV GSG L RLD +LVN
Subjt:  ---------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVN

Query:  E
        +
Subjt:  E

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]5.3e-5236.34Show/hide
Query:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLAQ-----------------------------------------------------GESKVQQEATV
        ME WTE+ +AI+AS +GKP++LD ATKE  RLS A+                                                      ESK+ QE  V
Subjt:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLAQ-----------------------------------------------------GESKVQQEATV

Query:  SEAGP--------------------------------------SKRWGKQDEFTPVTRKKRELVSVKDKGKG----------------------------
        S+  P                                       K  GK+DEFT VTRKK ELVSV+D+GK                             
Subjt:  SEAGP--------------------------------------SKRWGKQDEFTPVTRKKRELVSVKDKGKG----------------------------

Query:  ------------------------------------KKTRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS-------
                                             +TRVRE NF+ VS RFG+SWDYS SYS+SGVGRIWV+WK++RF F+  VV+EQFV+       
Subjt:  ------------------------------------KKTRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS-------

Query:  --------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLD
                                  VEITS WS P VVMGDFNAIRVH +A GG+ + G++E+FD A R+ADLVEPSVQGNWFTW SKV GSG L RLD
Subjt:  --------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLD

Query:  CILVNEQWLA
         ILVN++WL+
Subjt:  CILVNEQWLA

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]1.4e-4945.88Show/hide
Query:  GKQDEFTPVTRKKRELVSVKDKGKGK-------------------------------------------------------KTRVREGNFNSVSTRFGDS
        GK DEFT VTRKK ELVS++D+GK                                                         +TRVREGNF+SVS RF +S
Subjt:  GKQDEFTPVTRKKRELVSVKDKGKGK-------------------------------------------------------KTRVREGNFNSVSTRFGDS

Query:  WDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS---------------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGN
        WDYS SYS+SGVGRIWVMWK++RF F+  V++EQFV+                                 VEITS WS P VVM DFNAIRVHS+A  G+
Subjt:  WDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS---------------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGN

Query:  LVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVNEQWLAT
         + G++E+F+ AIR+ADLVEPSVQGNWFTW SKV+GSG L RLD +LVN+ WL+T
Subjt:  LVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVNEQWLAT

TrEMBL top hitse value%identityAlignment
A0A5A7SPE5 Reverse transcriptase domain-containing protein7.0e-5045.88Show/hide
Query:  GKQDEFTPVTRKKRELVSVKDKGKGK-------------------------------------------------------KTRVREGNFNSVSTRFGDS
        GK DEFT VTRKK ELVS++D+GK                                                         +TRVREGNF+SVS RF +S
Subjt:  GKQDEFTPVTRKKRELVSVKDKGKGK-------------------------------------------------------KTRVREGNFNSVSTRFGDS

Query:  WDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS---------------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGN
        WDYS SYS+SGVGRIWVMWK++RF F+  V++EQFV+                                 VEITS WS P VVM DFNAIRVHS+A  G+
Subjt:  WDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS---------------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGN

Query:  LVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVNEQWLAT
         + G++E+F+ AIR+ADLVEPSVQGNWFTW SKV+GSG L RLD +LVN+ WL+T
Subjt:  LVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVNEQWLAT

A0A5A7TWG5 Reverse transcriptase domain-containing protein2.4e-5041.54Show/hide
Query:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLA------QGESKVQQEATVSEAG-------------------------------------------
        ME WTE+G+A++ASA+GKP+SLD ATKERRRLS A      +  S +  E TVS  G                                           
Subjt:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLA------QGESKVQQEATVSEAG-------------------------------------------

Query:  -------------------------------------PSKRWGKQDEFTPVTRKKRELVSVKDKGK-----------------GKK--------------
                                               K  GK DEFT VTR+K ELVSV+D+GK                 G K              
Subjt:  -------------------------------------PSKRWGKQDEFTPVTRKKRELVSVKDKGK-----------------GKK--------------

Query:  ------TRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVSVEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEF
              TRVREGNF+SVS RF +SWDYS SYS+SGVGRIWVMWK++RF F+ +V++EQF++VEITS WS P VVMGDFNAIRV+S+A GG+ + G++E+F
Subjt:  ------TRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVSVEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEF

Query:  DFAIREADLVEPSVQGNWFTWMSKV
        D AIR+ DLVEP VQGN F   SKV
Subjt:  DFAIREADLVEPSVQGNWFTWMSKV

A0A5A7U3C2 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein2.6e-5236.41Show/hide
Query:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLA------QGESKVQQEATVSEAG-------------------------------------------
        M+ WTE+G+A++AS +GKP+SLD A K+R RLS A      +G S +  E TVS  G                                           
Subjt:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLA------QGESKVQQEATVSEAG-------------------------------------------

Query:  -------------------------------------PSKRWGKQDEFTPVTRKKRELVSVKDKGKGK--------------------------------
                                               K  GK D+FT VTRKK ELVSV+D+GK                                  
Subjt:  -------------------------------------PSKRWGKQDEFTPVTRKKRELVSVKDKGKGK--------------------------------

Query:  --------------------------------KTRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS------------
                                        +TRVREGNF SVS RFG+SWDYS SYS+SGVGRIWVMWK++RF F+  V++EQFV+            
Subjt:  --------------------------------KTRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS------------

Query:  ---------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVN
                             VEITS WS P VVMGDFNAIRVHS+A GG+ + G++E+FD AIR+ADL+EPSVQGNWFTW SKV GSG L RLD +LVN
Subjt:  ---------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVN

Query:  E
        +
Subjt:  E

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein2.6e-5236.34Show/hide
Query:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLAQ-----------------------------------------------------GESKVQQEATV
        ME WTE+ +AI+AS +GKP++LD ATKE  RLS A+                                                      ESK+ QE  V
Subjt:  MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLAQ-----------------------------------------------------GESKVQQEATV

Query:  SEAGP--------------------------------------SKRWGKQDEFTPVTRKKRELVSVKDKGKG----------------------------
        S+  P                                       K  GK+DEFT VTRKK ELVSV+D+GK                             
Subjt:  SEAGP--------------------------------------SKRWGKQDEFTPVTRKKRELVSVKDKGKG----------------------------

Query:  ------------------------------------KKTRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS-------
                                             +TRVRE NF+ VS RFG+SWDYS SYS+SGVGRIWV+WK++RF F+  VV+EQFV+       
Subjt:  ------------------------------------KKTRVREGNFNSVSTRFGDSWDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS-------

Query:  --------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLD
                                  VEITS WS P VVMGDFNAIRVH +A GG+ + G++E+FD A R+ADLVEPSVQGNWFTW SKV GSG L RLD
Subjt:  --------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLD

Query:  CILVNEQWLA
         ILVN++WL+
Subjt:  CILVNEQWLA

A0A5D3DXE4 Reverse transcriptase domain-containing protein7.0e-5045.88Show/hide
Query:  GKQDEFTPVTRKKRELVSVKDKGKGK-------------------------------------------------------KTRVREGNFNSVSTRFGDS
        GK DEFT VTRKK ELVS++D+GK                                                         +TRVREGNF+SVS RF +S
Subjt:  GKQDEFTPVTRKKRELVSVKDKGKGK-------------------------------------------------------KTRVREGNFNSVSTRFGDS

Query:  WDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS---------------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGN
        WDYS SYS+SGVGRIWVMWK++RF F+  V++EQFV+                                 VEITS WS P VVM DFNAIRVHS+A  G+
Subjt:  WDYSSSYSSSGVGRIWVMWKRDRFDFTPSVVEEQFVS---------------------------------VEITSGWSIPNVVMGDFNAIRVHSKACGGN

Query:  LVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVNEQWLAT
         + G++E+F+ AIR+ADLVEPSVQGNWFTW SKV+GSG L RLD +LVN+ WL+T
Subjt:  LVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVNEQWLAT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTGGACGGAGTCGGGTATTGCAATTATTGCTAGTGCGATAGGTAAACCTCTTTCTTTAGATTCGGCCACTAAGGAAAGACGTAGACTATCTTTAGCTCAGGG
GGAATCTAAGGTTCAACAGGAGGCAACTGTGAGTGAGGCTGGCCCTAGCAAGCGATGGGGGAAGCAGGATGAGTTTACTCCTGTGACTCGTAAAAAGAGGGAGTTGGTTT
CGGTGAAGGATAAAGGGAAAGGGAAGAAGACTAGAGTTCGAGAGGGGAATTTCAATTCTGTTTCAACCCGGTTTGGTGATTCATGGGATTACTCCAGTAGCTATAGTAGC
AGTGGTGTTGGTCGGATTTGGGTGATGTGGAAGCGTGATAGATTTGATTTTACTCCTAGTGTGGTGGAGGAGCAGTTTGTTTCAGTTGAGATCACTTCTGGATGGTCGAT
TCCGAATGTTGTCATGGGTGACTTTAATGCTATTCGTGTGCACTCTAAAGCTTGTGGTGGGAATCTGGTTCCTGGTGATGTGGAGGAGTTTGATTTTGCTATTCGTGAGG
CTGACTTGGTAGAGCCGTCTGTTCAGGGTAACTGGTTCACTTGGATGAGTAAGGTTCGTGGTTCTGGGTGGTTGCATCGGCTTGATTGTATTTTAGTGAATGAGCAGTGG
TTAGCTACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTTGGACGGAGTCGGGTATTGCAATTATTGCTAGTGCGATAGGTAAACCTCTTTCTTTAGATTCGGCCACTAAGGAAAGACGTAGACTATCTTTAGCTCAGGG
GGAATCTAAGGTTCAACAGGAGGCAACTGTGAGTGAGGCTGGCCCTAGCAAGCGATGGGGGAAGCAGGATGAGTTTACTCCTGTGACTCGTAAAAAGAGGGAGTTGGTTT
CGGTGAAGGATAAAGGGAAAGGGAAGAAGACTAGAGTTCGAGAGGGGAATTTCAATTCTGTTTCAACCCGGTTTGGTGATTCATGGGATTACTCCAGTAGCTATAGTAGC
AGTGGTGTTGGTCGGATTTGGGTGATGTGGAAGCGTGATAGATTTGATTTTACTCCTAGTGTGGTGGAGGAGCAGTTTGTTTCAGTTGAGATCACTTCTGGATGGTCGAT
TCCGAATGTTGTCATGGGTGACTTTAATGCTATTCGTGTGCACTCTAAAGCTTGTGGTGGGAATCTGGTTCCTGGTGATGTGGAGGAGTTTGATTTTGCTATTCGTGAGG
CTGACTTGGTAGAGCCGTCTGTTCAGGGTAACTGGTTCACTTGGATGAGTAAGGTTCGTGGTTCTGGGTGGTTGCATCGGCTTGATTGTATTTTAGTGAATGAGCAGTGG
TTAGCTACCTAG
Protein sequenceShow/hide protein sequence
MEFWTESGIAIIASAIGKPLSLDSATKERRRLSLAQGESKVQQEATVSEAGPSKRWGKQDEFTPVTRKKRELVSVKDKGKGKKTRVREGNFNSVSTRFGDSWDYSSSYSS
SGVGRIWVMWKRDRFDFTPSVVEEQFVSVEITSGWSIPNVVMGDFNAIRVHSKACGGNLVPGDVEEFDFAIREADLVEPSVQGNWFTWMSKVRGSGWLHRLDCILVNEQW
LAT