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PI0013116 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013116
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRas-related protein RABA5b-like
Genome locationchr07:2278478..2279005
RNA-Seq ExpressionPI0013116
SyntenyPI0013116
Gene Ontology termsGO:0005768 - endosome (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001806 - Small GTPase
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044545.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.2e-1172.88Show/hide
Query:  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDMK
        MVA+FNLVL ++SVIGKSK LLPF  NEI DV YKASIGVEFQIQVL +NGKE +  M+
Subjt:  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDMK

KGN53014.1 hypothetical protein Csa_015426 [Cucumis sativus]3.4e-1469.57Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDMKRM-----NIFRWRN
        +FNLVLI++SV+GKS LLLPF RNEIDVNYKASIGVEFQIQVLKINGKE +  + R      + F WRN
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDMKRM-----NIFRWRN

MBA0844539.1 hypothetical protein [Gossypium armourianum]5.3e-0759.26Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +VLI DS +GKS LL  F RNE D N KA+IGVEFQ QV++INGKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

TYK17038.1 ras-related protein RABA5b-like [Cucumis melo var. makuwa]2.1e-1174.14Show/hide
Query:  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDM
        MVA+FNLVL ++SVIGKSK LLPF  NEI DV YKASIGVEFQIQVL +NGKE +  M
Subjt:  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDM

XP_021907378.1 ras-related protein RABA5b [Carica papaya]5.3e-0757.41Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +VLI DS +GKS LL  F RNE D N KA+IGVEFQ QV++I+GKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

TrEMBL top hitse value%identityAlignment
A0A0A0KVZ8 Uncharacterized protein1.7e-1469.57Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDMKRM-----NIFRWRN
        +FNLVLI++SV+GKS LLLPF RNEIDVNYKASIGVEFQIQVLKINGKE +  + R      + F WRN
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDMKRM-----NIFRWRN

A0A445BSW9 Uncharacterized protein5.7e-0757.41Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +VLI DS +GKS LL  F RNE D N KA+IGVEFQ QV++I GKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

A0A5A7TT53 Pentatricopeptide repeat-containing protein5.9e-1272.88Show/hide
Query:  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDMK
        MVA+FNLVL ++SVIGKSK LLPF  NEI DV YKASIGVEFQIQVL +NGKE +  M+
Subjt:  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDMK

A0A5D3D0L2 Ras-related protein RABA5b-like1.0e-1174.14Show/hide
Query:  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDM
        MVA+FNLVL ++SVIGKSK LLPF  NEI DV YKASIGVEFQIQVL +NGKE +  M
Subjt:  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDM

A0A7J9KE47 Uncharacterized protein2.6e-0759.26Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +VLI DS +GKS LL  F RNE D N KA+IGVEFQ QV++INGKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

SwissProt top hitse value%identityAlignment
P19892 Ras-related protein RABA5e1.4e-0750Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +V+I DS +GKS LL  + RNE   N KA+IGVEFQ Q ++I GKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

P28187 Ras-related protein RABA5c1.9e-0750Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +V+I DS +GKS LL  + RNE + N KA+IGVEFQ Q + I+GKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

Q9FGK5 Ras-related protein RABA5a2.5e-0751.85Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +VLI DS +GKS LL  F R+E   N K++IGVEFQ Q + INGKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

Q9SIP0 Ras-related protein RABA5d4.2e-0748.15Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +V+I DS +GKS LL  + RNE + + KA+IGVEFQ Q ++I GKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

Q9SRS5 Ras-related protein RABA5b1.0e-0853.7Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +VLI DS +GKS LL  F R+E D N KA+IGVEFQ Q+++I GKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

Arabidopsis top hitse value%identityAlignment
AT1G05810.1 RAB GTPase homolog A5E1.0e-0850Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +V+I DS +GKS LL  + RNE   N KA+IGVEFQ Q ++I GKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

AT2G31680.1 RAB GTPase homolog A5D3.0e-0848.15Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +V+I DS +GKS LL  + RNE + + KA+IGVEFQ Q ++I GKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

AT2G43130.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.3e-0850Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +V+I DS +GKS LL  + RNE + N KA+IGVEFQ Q + I+GKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

AT3G07410.1 RAB GTPase homolog A5B7.1e-1053.7Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +VLI DS +GKS LL  F R+E D N KA+IGVEFQ Q+++I GKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM

AT5G47520.1 RAB GTPase homolog A5A1.8e-0851.85Show/hide
Query:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM
        +F +VLI DS +GKS LL  F R+E   N K++IGVEFQ Q + INGKE +  +
Subjt:  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGCCGTGTTCAACCTTGTTTTGATCGAAGACTCTGTTATCGGGAAATCGAAGCTCCTCTTGCCATTCCATCGGAATGAGATTGATGTTAACTACAAGGCCTCAAT
CGGCGTCGAGTTTCAGATTCAAGTGCTGAAAATCAATGGCAAAGAGTATGAAGGAGATATGAAAAGGATGAACATATTTCGCTGGCGAAATGTGCACTTTATAATTGTTC
CAAGCTTGAGGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGCCGTGTTCAACCTTGTTTTGATCGAAGACTCTGTTATCGGGAAATCGAAGCTCCTCTTGCCATTCCATCGGAATGAGATTGATGTTAACTACAAGGCCTCAAT
CGGCGTCGAGTTTCAGATTCAAGTGCTGAAAATCAATGGCAAAGAGTATGAAGGAGATATGAAAAGGATGAACATATTTCGCTGGCGAAATGTGCACTTTATAATTGTTC
CAAGCTTGAGGAAATGA
Protein sequenceShow/hide protein sequence
MVAVFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDMKRMNIFRWRNVHFIIVPSLRK