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PI0013131 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013131
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr06:8702409..8702791
RNA-Seq ExpressionPI0013131
SyntenyPI0013131
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052859.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-3375.22Show/hide
Query:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------EKKTTRSHRGGGLTNKDDHQRRQ
        MK+KE E V DYIT+VQTVVNQLK NG+T KD RIVEKILRSLTNDF+NVVCAIE+ KNLEEMTI EL          KK TR  R GGLTNKDDHQRRQ
Subjt:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------EKKTTRSHRGGGLTNKDDHQRRQ

Query:  GNVCTTQSRKRTW
        GNVCTTQSRK+TW
Subjt:  GNVCTTQSRKRTW

KAA0060771.1 polyprotein [Cucumis melo var. makuwa]2.8e-2870.75Show/hide
Query:  DYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAEKKTTRSHRGGGLTNKDDHQRRQGNVCTTQ
        D + + Q VVNQLKHNG+TLKDAR+VEKI  SLTNDFENVVCA EESKNLEEMT             E  EKKTTR   G G+TNKDDHQRRQGNVCTTQ
Subjt:  DYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAEKKTTRSHRGGGLTNKDDHQRRQGNVCTTQ

Query:  SRKRTW
        SRKRTW
Subjt:  SRKRTW

KAE8706666.1 hypothetical protein F3Y22_tig00110388pilonHSYRG00007 [Hibiscus syriacus]2.1e-2369.47Show/hide
Query:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRGGGLTNKDDHQRRQGNV
        MKMKELEGVFDYITRVQTVVNQLK NGETLKD+R+VEKILRSLT+DFENVVCAIE SK+LEE+TID+LAE       R     N+   +  Q  V
Subjt:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRGGGLTNKDDHQRRQGNV

KAE8735514.1 hypothetical protein F3Y22_tig00000340pilonHSYRG00533 [Hibiscus syriacus]2.5e-2156.52Show/hide
Query:  MKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA-----EKKTTRSHRGGGLTNKDDHQRRQGNVCT
        MKE EGV DYITRVQTVVNQLK NG+TLKD+R+VEKILRSLT+DFEN+VCAIEESK+LEE+TID+L      ++    + RGGG  ++  +   +G    
Subjt:  MKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA-----EKKTTRSHRGGGLTNKDDHQRRQGNVCT

Query:  TQSRKRTWQFQSRQR
         QS ++ W+ + R R
Subjt:  TQSRKRTWQFQSRQR

XP_038878101.1 uncharacterized protein LOC120070273 isoform X4 [Benincasa hispida]3.3e-2184.06Show/hide
Query:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA
        MKMKE E V  YITRVQTVVNQLK NGETL+DA++VEKILRSLTNDF+NVVCAIEESK LEEMTID+LA
Subjt:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA

TrEMBL top hitse value%identityAlignment
A0A5D3C1S7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-3375.22Show/hide
Query:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------EKKTTRSHRGGGLTNKDDHQRRQ
        MK+KE E V DYIT+VQTVVNQLK NG+T KD RIVEKILRSLTNDF+NVVCAIE+ KNLEEMTI EL          KK TR  R GGLTNKDDHQRRQ
Subjt:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA--------EKKTTRSHRGGGLTNKDDHQRRQ

Query:  GNVCTTQSRKRTW
        GNVCTTQSRK+TW
Subjt:  GNVCTTQSRKRTW

A0A5D3CND8 Polyprotein1.4e-2870.75Show/hide
Query:  DYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAEKKTTRSHRGGGLTNKDDHQRRQGNVCTTQ
        D + + Q VVNQLKHNG+TLKDAR+VEKI  SLTNDFENVVCA EESKNLEEMT             E  EKKTTR   G G+TNKDDHQRRQGNVCTTQ
Subjt:  DYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTI-----------DELAEKKTTRSHRGGGLTNKDDHQRRQGNVCTTQ

Query:  SRKRTW
        SRKRTW
Subjt:  SRKRTW

A0A6A2XY19 Integrase catalytic domain-containing protein1.6e-2175Show/hide
Query:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRGG
        M MKE EGV DYIT VQTVVNQLK NGETLKD+R+VEKILRSLT+DFENVVCAIEESK+LEE+TID LA        R G
Subjt:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRGG

A0A6A3AQY9 CCHC-type domain-containing protein1.0e-2369.47Show/hide
Query:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRGGGLTNKDDHQRRQGNV
        MKMKELEGVFDYITRVQTVVNQLK NGETLKD+R+VEKILRSLT+DFENVVCAIE SK+LEE+TID+LAE       R     N+   +  Q  V
Subjt:  MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRGGGLTNKDDHQRRQGNV

A0A6A3D4Q3 Uncharacterized protein1.2e-2156.52Show/hide
Query:  MKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA-----EKKTTRSHRGGGLTNKDDHQRRQGNVCT
        MKE EGV DYITRVQTVVNQLK NG+TLKD+R+VEKILRSLT+DFEN+VCAIEESK+LEE+TID+L      ++    + RGGG  ++  +   +G    
Subjt:  MKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELA-----EKKTTRSHRGGGLTNKDDHQRRQGNVCT

Query:  TQSRKRTWQFQSRQR
         QS ++ W+ + R R
Subjt:  TQSRKRTWQFQSRQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGAAGGAGTTAGAAGGAGTATTTGACTACATCACCCGGGTTCAAACGGTGGTGAACCAACTTAAACACAATGGAGAAACCCTCAAAGATGCTAGGATTGTGGA
GAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAGAAAAAAAGACAA
CAAGAAGTCATAGAGGAGGCGGCCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGCAGTTTCAGTCGCGG
CAAAGGTTATGGTCGTGGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGAAGGAGTTAGAAGGAGTATTTGACTACATCACCCGGGTTCAAACGGTGGTGAACCAACTTAAACACAATGGAGAAACCCTCAAAGATGCTAGGATTGTGGA
GAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAGAAAAAAAGACAA
CAAGAAGTCATAGAGGAGGCGGCCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGCAGTTTCAGTCGCGG
CAAAGGTTATGGTCGTGGAAATAA
Protein sequenceShow/hide protein sequence
MKMKELEGVFDYITRVQTVVNQLKHNGETLKDARIVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRGGGLTNKDDHQRRQGNVCTTQSRKRTWQFQSR
QRLWSWK