CuGenDBv2

Gene ID	PI0013149
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr07:6312759..6313487
RNA-Seq Expression	PI0013149
Synteny	PI0013149
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051899.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.5e-56

67.02

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Query:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS
        RFNK+FVPN+G NSNKGT  NNFRNNN K  TAF+TSH  NPFNV  E S D NWY +N A NH+T                 VTIGNG+KLKI SIGNS
Subjt:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS

Query:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAEVKRNSNDLKE
        TLMN  YMLSLDN+LYVPA AK+LVSV K AR  H+FVEFH+DYCL+KD GTRQTILKGMLKD LYHLEE VVK  A+ KRN+ND K+
Subjt:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAEVKRNSNDLKE

KAF7809814.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora]

4.6e-18

41.67

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Query:  NSKSPTAFMTSHHGNPFN---VAGEYSADTNWYDDNGATNHVT----------------VVTIGNGEKLKIASIGNST-LMNVSYMLSLDNILYVPATAK
        NS+ P     + +  P      A E   D NWY D+GA+NHVT                 V +GNG+ L+I +IG+S+ L+N + +L L N+L+VPA  K
Subjt:  NSKSPTAFMTSHHGNPFN---VAGEYSADTNWYDDNGATNHVT----------------VVTIGNGEKLKIASIGNST-LMNVSYMLSLDNILYVPATAK

Query:  NLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLY
        NL+SV KLAR N++++EF+ D  L+K + T++T+LKG +KDGLY
Subjt:  NLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLY

TYJ99887.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.5e-57

67.55

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Query:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS
        RFNK+FVPN+G NSNKGT  NNFRNNN K  TAF+TSH  NPFNV  E S D NWY +N A NH+T                 VTIGNG+KLKI SIGNS
Subjt:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS

Query:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAEVKRNSNDLKE
        TLMN  YMLSLDN+LYVPA AKNLVSV K AR  H+FVEFH+DYCL+KD GTRQTILKGMLKD LYHLEE VVK  A+ KRN+ND K+
Subjt:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAEVKRNSNDLKE

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

7.1e-19

37.2

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Query:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS
        RFNKEF+  +    ++G  ++NF  +++   T  +T    N F  A +   + NWY D+GATNH+TV                + +GNG+ L I+ IGN+
Subjt:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS

Query:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAE-----VKRNSNDLKEVVDVNKV
         L +    L+L N+L VP   KNLVSV KLA+ N++++EFH  YC +KDK T +T+L   +KDGLYHL+ +  +  AE      +RNS   K  V ++  
Subjt:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAE-----VKRNSNDLKEVVDVNKV

Query:  NQSAQFL
            Q L
Subjt:  NQSAQFL

XP_016901889.1 PREDICTED: uncharacterized protein LOC107991455 [Cucumis melo]

1.6e-18

42.04

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Query:  FNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNST
        FNKEFV +   N N+G N N    N+ ++PTAF+T+ + NPF +  E   D+NWY D+GATN+VT+                 ++GNG KL+I  +GN  
Subjt:  FNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNST

Query:  LMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILK
        L + +  L L+N+L VP   KNLVSV KLA+ N++++EFH+ +C +K K T + IL+
Subjt:  LMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E0Z3 uncharacterized protein LOC107991455

7.6e-19

42.04

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Query:  FNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNST
        FNKEFV +   N N+G N N    N+ ++PTAF+T+ + NPF +  E   D+NWY D+GATN+VT+                 ++GNG KL+I  +GN  
Subjt:  FNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNST

Query:  LMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILK
        L + +  L L+N+L VP   KNLVSV KLA+ N++++EFH+ +C +K K T + IL+
Subjt:  LMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILK

A0A2K3NEN7 Copia-like polyprotein (Fragment)

8.4e-18

48.78

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Query:  YSADTNWYDDNGATNHVTVVT----------------IGNGEKLKIASIGNSTLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLK
        +  D  WY D+GA+NHVT  T                +GNGEKLKI + G ST +N    L+L ++LYVP   KNL+SV KL   N+IFVEF  + C +K
Subjt:  YSADTNWYDDNGATNHVTVVT----------------IGNGEKLKIASIGNSTLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLK

Query:  DKGTRQTILKGMLKDGLYHLEEV
        DK T QT+LKG LKDGLY L +V
Subjt:  DKGTRQTILKGMLKDGLYHLEEV

A0A5A7UEH3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-56

67.02

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Query:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS
        RFNK+FVPN+G NSNKGT  NNFRNNN K  TAF+TSH  NPFNV  E S D NWY +N A NH+T                 VTIGNG+KLKI SIGNS
Subjt:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS

Query:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAEVKRNSNDLKE
        TLMN  YMLSLDN+LYVPA AK+LVSV K AR  H+FVEFH+DYCL+KD GTRQTILKGMLKD LYHLEE VVK  A+ KRN+ND K+
Subjt:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAEVKRNSNDLKE

A0A5D3BL83 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.2e-57

67.55

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Query:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS
        RFNK+FVPN+G NSNKGT  NNFRNNN K  TAF+TSH  NPFNV  E S D NWY +N A NH+T                 VTIGNG+KLKI SIGNS
Subjt:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS

Query:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAEVKRNSNDLKE
        TLMN  YMLSLDN+LYVPA AKNLVSV K AR  H+FVEFH+DYCL+KD GTRQTILKGMLKD LYHLEE VVK  A+ KRN+ND K+
Subjt:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAEVKRNSNDLKE

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.4e-19

37.2

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Query:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS
        RFNKEF+  +    ++G  ++NF  +++   T  +T    N F  A +   + NWY D+GATNH+TV                + +GNG+ L I+ IGN+
Subjt:  RFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNS

Query:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAE-----VKRNSNDLKEVVDVNKV
         L +    L+L N+L VP   KNLVSV KLA+ N++++EFH  YC +KDK T +T+L   +KDGLYHL+ +  +  AE      +RNS   K  V ++  
Subjt:  TLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAE-----VKRNSNDLKEVVDVNKV

Query:  NQSAQFL
            Q L
Subjt:  NQSAQFL

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

2.2e-07

30.57

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Query:  GNNSNKGTNNNNFRNN-NSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNSTLMNVSYML
        G+++ + +   +F ++ NS+ P +  T          G   +  NW  D+GAT+H+T                 V + +G  + I+  G+++L   S  L
Subjt:  GNNSNKGTNNNNFRNN-NSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGEKLKIASIGNSTLMNVSYML

Query:  SLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLY
        +L NILYVP   KNL+SV +L   N + VEF      +KD  T   +L+G  KD LY
Subjt:  SLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.2e-05

28.98

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Query:  DNRRARARFNK-EFVPNNGNNSNKGTNNNNFRN--NNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGE
        DNR+ +    + +     G+++ +    + F++  N  +S + F          V   Y+A+ NW  D+GAT+H+T                 V I +G 
Subjt:  DNRRARARFNK-EFVPNNGNNSNKGTNNNNFRN--NNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTV----------------VTIGNGE

Query:  KLKIASIGNSTLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLY
         + I   G+++L   S  L L+ +LYVP   KNL+SV +L   N + VEF      +KD  T   +L+G  KD LY
Subjt:  KLKIASIGNSTLMNVSYMLSLDNILYVPATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGGACAATCGGAGGGCGAGGGCGAGATTCAATAAGGAATTTGTTCCGAACAATGGAAATAATTCAAACAAAGGGACAAACAACAATAATTTTAGGAACAACAATAG
CAAATCACCCACTGCCTTTATGACCTCACATCATGGTAACCCATTTAATGTGGCTGGTGAATATAGTGCTGACACCAATTGGTATGACGACAACGGAGCTACAAACCATG
TGACTGTCGTCACAATAGGTAATGGTGAAAAATTAAAAATTGCATCAATTGGTAACTCAACTCTCATGAATGTAAGTTATATGCTGTCTCTTGATAATATTCTGTATGTT
CCTGCCACTGCTAAAAATTTAGTAAGTGTACCTAAACTTGCAAGATATAATCATATTTTTGTTGAATTTCATAATGACTACTGTCTTTTAAAGGACAAGGGTACGAGGCA
AACAATTTTGAAGGGAATGCTTAAAGATGGTCTATATCATCTGGAAGAAGTTGTTGTGAAACCTACTGCTGAAGTAAAGAGGAATTCCAATGACTTAAAAGAGGTTGTGG
ACGTAAATAAAGTGAACCAATCAGCCCAATTTTTAGCAAATATTTCCGTTAATAGTGTTGTCTAA

mRNA sequence

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Protein sequence

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MEDNRRARARFNKEFVPNNGNNSNKGTNNNNFRNNNSKSPTAFMTSHHGNPFNVAGEYSADTNWYDDNGATNHVTVVTIGNGEKLKIASIGNSTLMNVSYMLSLDNILYV
PATAKNLVSVPKLARYNHIFVEFHNDYCLLKDKGTRQTILKGMLKDGLYHLEEVVVKPTAEVKRNSNDLKEVVDVNKVNQSAQFLANISVNSVV

PI0013149 (gene) of Melon (PI 482460) v1 genome