; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0013233 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013233
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr02:15313870..15314856
RNA-Seq ExpressionPI0013233
SyntenyPI0013233
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.8e-8270.67Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW
        MEK+D+ARPISTILDG+NYITWAHQMRSF I RKLWRIVTGDITKPVKP                       + E + ED++YIE+LEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL
        LGNTSIPAIHTQFDAFD+AKELWDFL TRFQSI LAHYYQLHS LVSLNQE+G SVNEYLATLQPIWTQLDQAK SPDHIRLIKVLMGLR EYES+RAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL

Query:  YITTPYHHLTPSFKKSYLRRKDLAL
            P   L  + ++     K L +
Subjt:  YITTPYHHLTPSFKKSYLRRKDLAL

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.5e-8570Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW
        MEK+ +ARPISTILDG+NYITWAHQMRSF I RKLWRIVTGDITKPVKPT     TS + T++ + +  +  + E T ED++YIE+LEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL
        LGNTSIPAIHTQFD FD+AKELW+FL TRFQSI LAHYYQLHS LV+LNQEVG SVNEYL T QPIWTQLDQAK SPDHIRLIKVLMGLRSEYES+RAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL

Query:  YITTPYHHLTPSFKKSYLRRKDLALSPLCP
            P   L  + ++     K L +    P
Subjt:  YITTPYHHLTPSFKKSYLRRKDLALSPLCP

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]2.3e-8270.67Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW
        MEK+D+ARPISTILDG+NYITWAHQMRSF I RKLWRIVTGDITKPVKP                       + E + ED++YIE+LEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL
        LGNTSIPAIHTQFDAFD+AKELWDFL TRFQSI LAHYYQLHS LVSLNQEVG SVNEYLATLQPIWTQL+QAK SPDHIRLIKVLMGLR EYES+RAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL

Query:  YITTPYHHLTPSFKKSYLRRKDLAL
            P   L  + ++     K L +
Subjt:  YITTPYHHLTPSFKKSYLRRKDLAL

XP_016901896.1 PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo]4.0e-8260.28Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW
        M+K+++AR ISTILDG+NYITWAH MRSF I RKLWRIVTGDITKP+KPT      + D T N +    +  I E T ED+KYIE+LEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL
        LGNTSIPAIHTQ D+FDTAKELWDFL+TRFQSI LAHYYQL+S L++LNQEVG SVNEYLATLQPIWTQLDQ K +PDHIRLIKVLMGLR EYES+RAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL

Query:  YITTPYHHLTPSFKKSYLRRKDLALSPLCP--LMLPSQLLTHGLLMSSLSAKIVNFRVISLLIVLPLSAVNHTNPSSRLNRV
            P   L  + ++     K L +    P  + L +  L      + ++ ++  + ++ L+ ++PL  V H NPSS L  V
Subjt:  YITTPYHHLTPSFKKSYLRRKDLALSPLCP--LMLPSQLLTHGLLMSSLSAKIVNFRVISLLIVLPLSAVNHTNPSSRLNRV

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]7.0e-8773.04Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW
        MEK ++ARPISTILDG+NYITWAHQMRSF I RKLWRIVTGDITKPVKPT        DTT+N + D  + T+QE T E  KYIE+LEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL
        LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSI LAHYYQLHSRLVSLNQE G SVNEYLATLQPIWTQLDQAK +P+HIRLIKVLMGLR EYES+RAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL

Query:  YITTPYHHLTPSFKKSYLRRKDLALSPLCP
            P   L  + ++       L +    P
Subjt:  YITTPYHHLTPSFKKSYLRRKDLALSPLCP

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882001.1e-8270.67Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW
        MEK+D+ARPISTILDG+NYITWAHQMRSF I RKLWRIVTGDITKPVKP                       + E + ED++YIE+LEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL
        LGNTSIPAIHTQFDAFD+AKELWDFL TRFQSI LAHYYQLHS LVSLNQEVG SVNEYLATLQPIWTQL+QAK SPDHIRLIKVLMGLR EYES+RAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL

Query:  YITTPYHHLTPSFKKSYLRRKDLAL
            P   L  + ++     K L +
Subjt:  YITTPYHHLTPSFKKSYLRRKDLAL

A0A1S4E0Y9 uncharacterized protein LOC1079914631.9e-8260.28Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW
        M+K+++AR ISTILDG+NYITWAH MRSF I RKLWRIVTGDITKP+KPT      + D T N +    +  I E T ED+KYIE+LEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL
        LGNTSIPAIHTQ D+FDTAKELWDFL+TRFQSI LAHYYQL+S L++LNQEVG SVNEYLATLQPIWTQLDQ K +PDHIRLIKVLMGLR EYES+RAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL

Query:  YITTPYHHLTPSFKKSYLRRKDLALSPLCP--LMLPSQLLTHGLLMSSLSAKIVNFRVISLLIVLPLSAVNHTNPSSRLNRV
            P   L  + ++     K L +    P  + L +  L      + ++ ++  + ++ L+ ++PL  V H NPSS L  V
Subjt:  YITTPYHHLTPSFKKSYLRRKDLALSPLCP--LMLPSQLLTHGLLMSSLSAKIVNFRVISLLIVLPLSAVNHTNPSSRLNRV

A0A5A7TXR0 Putative mitochondrial protein4.1e-8570Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW
        MEK+ +ARPISTILDG+NYITWAHQMRSF I RKLWRIVTGDITKPVKPT     TS + T++ + +  +  + E T ED++YIE+LEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL
        LGNTSIPAIHTQFD FD+AKELW+FL TRFQSI LAHYYQLHS LV+LNQEVG SVNEYL T QPIWTQLDQAK SPDHIRLIKVLMGLRSEYES+RAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL

Query:  YITTPYHHLTPSFKKSYLRRKDLALSPLCP
            P   L  + ++     K L +    P
Subjt:  YITTPYHHLTPSFKKSYLRRKDLALSPLCP

A0A5D3BW47 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-8068.89Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW
        MEK+D+ARPISTILD +NYITWAHQMRSF I RKLWRIVTGDIT+PVKP                       + E + ED++YIE+LEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL
        LGNTSIPAIHTQFDAFD+AKELWDFL TRFQSI LAHYYQLHS LVSLNQEVG SVN+YLATLQPIWTQLDQAK SPDHIRLIKVL+GLR +YES+RAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL

Query:  YITTPYHHLTPSFKKSYLRRKDLAL
            P   L  + ++     K L +
Subjt:  YITTPYHHLTPSFKKSYLRRKDLAL

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-948.6e-8370.67Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW
        MEK+D+ARPISTILDG+NYITWAHQMRSF I RKLWRIVTGDITKPVKP                       + E + ED++YIE+LEDWDSKNHQIITW
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL
        LGNTSIPAIHTQFDAFD+AKELWDFL TRFQSI LAHYYQLHS LVSLNQE+G SVNEYLATLQPIWTQLDQAK SPDHIRLIKVLMGLR EYES+RAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAAL

Query:  YITTPYHHLTPSFKKSYLRRKDLAL
            P   L  + ++     K L +
Subjt:  YITTPYHHLTPSFKKSYLRRKDLAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAGTGACATTGCTCGTCCTATTAGCACCATTCTTGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGTTTTTTTATCGATCGAAAATTATGGCG
TATAGTGACTGGCGATATCACCAAGCCTGTCAAACCCACTCATTCAGGGAATGCCACCAGTTCGGACACCACTAAGAATGCTAATGTAGACCTCCCAAATACTACCATTC
AGGAGATTACTACTGAAGACGTCAAGTACATTGAAAAACTTGAGGATTGGGATAGCAAAAATCATCAAATCATCACATGGTTGGGTAACACTTCTATTCCGGCTATTCAT
ACACAATTTGATGCATTTGACACTGCAAAAGAACTTTGGGATTTTCTGTCCACACGCTTTCAATCTATTGATCTTGCACATTATTATCAATTACATTCTCGTCTTGTTAG
TCTAAACCAGGAAGTCGGACTATCTGTGAATGAATATCTTGCCACTCTTCAGCCTATTTGGACTCAGTTAGACCAGGCAAAAAGCAGTCCTGACCATATTCGTCTCATCA
AAGTACTTATGGGACTCCGTTCAGAGTATGAATCTATTCGGGCTGCTCTTTACATCACAACCCCCTACCATCACTTAACGCCGTCGTTCAAGAAATCTTATTTGAGGAGA
AAAGACTTGGCATTGTCTCCTCTCTGCCCTCTGATGCTGCCCTCGCAACTACTCACTCATGGCCTACTAATGAGTTCCCTTTCTGCAAAAATTGTAAACTTCAGGGTCAT
AAGTTTGCTAATTGTCCTACCATTGAGTGCAGTCAATCACACAAACCCAAGTTCTCGCCTAAATCGGGTTCCTCATCTGTGGTTGCTGCTGCCATCGCATCTGACACTAC
GACATCTCCGAGTTTTTAGTTACATGATCTCCATGACTTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAGTGACATTGCTCGTCCTATTAGCACCATTCTTGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGTTTTTTTATCGATCGAAAATTATGGCG
TATAGTGACTGGCGATATCACCAAGCCTGTCAAACCCACTCATTCAGGGAATGCCACCAGTTCGGACACCACTAAGAATGCTAATGTAGACCTCCCAAATACTACCATTC
AGGAGATTACTACTGAAGACGTCAAGTACATTGAAAAACTTGAGGATTGGGATAGCAAAAATCATCAAATCATCACATGGTTGGGTAACACTTCTATTCCGGCTATTCAT
ACACAATTTGATGCATTTGACACTGCAAAAGAACTTTGGGATTTTCTGTCCACACGCTTTCAATCTATTGATCTTGCACATTATTATCAATTACATTCTCGTCTTGTTAG
TCTAAACCAGGAAGTCGGACTATCTGTGAATGAATATCTTGCCACTCTTCAGCCTATTTGGACTCAGTTAGACCAGGCAAAAAGCAGTCCTGACCATATTCGTCTCATCA
AAGTACTTATGGGACTCCGTTCAGAGTATGAATCTATTCGGGCTGCTCTTTACATCACAACCCCCTACCATCACTTAACGCCGTCGTTCAAGAAATCTTATTTGAGGAGA
AAAGACTTGGCATTGTCTCCTCTCTGCCCTCTGATGCTGCCCTCGCAACTACTCACTCATGGCCTACTAATGAGTTCCCTTTCTGCAAAAATTGTAAACTTCAGGGTCAT
AAGTTTGCTAATTGTCCTACCATTGAGTGCAGTCAATCACACAAACCCAAGTTCTCGCCTAAATCGGGTTCCTCATCTGTGGTTGCTGCTGCCATCGCATCTGACACTAC
GACATCTCCGAGTTTTTAGTTACATGATCTCCATGACTTACTGA
Protein sequenceShow/hide protein sequence
MEKSDIARPISTILDGSNYITWAHQMRSFFIDRKLWRIVTGDITKPVKPTHSGNATSSDTTKNANVDLPNTTIQEITTEDVKYIEKLEDWDSKNHQIITWLGNTSIPAIH
TQFDAFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGLSVNEYLATLQPIWTQLDQAKSSPDHIRLIKVLMGLRSEYESIRAALYITTPYHHLTPSFKKSYLRR
KDLALSPLCPLMLPSQLLTHGLLMSSLSAKIVNFRVISLLIVLPLSAVNHTNPSSRLNRVPHLWLLLPSHLTLRHLRVFSYMISMTY