; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0013247 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013247
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPaired amphipathic helix protein Sin3-like 2-like
Genome locationchr09:3351370..3353823
RNA-Seq ExpressionPI0013247
SyntenyPI0013247
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0016575 - histone deacetylation (biological process)
GO:0000118 - histone deacetylase complex (cellular component)
GO:0000785 - chromatin (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR003822 - Paired amphipathic helix
IPR036600 - Paired amphipathic helix superfamily
IPR039774 - Transcriptional regulatory protein Sin3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EYU34691.1 hypothetical protein MIMGU_mgv1a0002561mg, partial [Erythranthe guttata]1.5e-1048.61Show/hide
Query:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        GS++K T  +AL+Y+  V++RF++ REKY++FL  +KDF A+RI+   + A+V +LF+ HP+LI GF +FLP
Subjt:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

KAG8384767.1 hypothetical protein BUALT_Bualt04G0152800 [Buddleja alternifolia]1.2e-1050Show/hide
Query:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        GS++K T  +ALSY+ +V++ F++ +EKY+RFL  +KDF A+RI+   + A+V  LF  HPDLI GF +FLP
Subjt:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

KDP45895.1 hypothetical protein JCGZ_15455 [Jatropha curcas]5.2e-1147.37Show/hide
Query:  RHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLPNK
        R  S +K T+ ++L+Y++ V+E F++ REKY+ FL+ +KDF   RIN++ + A+V NLF+ H DLI GF +FLP K
Subjt:  RHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLPNK

XP_011098544.1 paired amphipathic helix protein Sin3-like 2 isoform X1 [Sesamum indicum]2.0e-1048.61Show/hide
Query:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        GS++K T  +ALSY+ +V++ F++ REKY+RFL  +KDF A+R++   + A+V  LF+ HP+LI GF +FLP
Subjt:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

XP_012840651.1 PREDICTED: paired amphipathic helix protein Sin3-like 2 [Erythranthe guttata]1.5e-1048.61Show/hide
Query:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        GS++K T  +AL+Y+  V++RF++ REKY++FL  +KDF A+RI+   + A+V +LF+ HP+LI GF +FLP
Subjt:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

TrEMBL top hitse value%identityAlignment
A0A022R394 HDAC_interact domain-containing protein (Fragment)7.4e-1148.61Show/hide
Query:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        GS++K T  +AL+Y+  V++RF++ REKY++FL  +KDF A+RI+   + A+V +LF+ HP+LI GF +FLP
Subjt:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

A0A067LM75 Uncharacterized protein2.5e-1147.37Show/hide
Query:  RHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLPNK
        R  S +K T+ ++L+Y++ V+E F++ REKY+ FL+ +KDF   RIN++ + A+V NLF+ H DLI GF +FLP K
Subjt:  RHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLPNK

A0A565B3B8 HDAC_interact domain-containing protein1.6e-1050.7Show/hide
Query:  SSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        +S+K T  +ALSY+  V+E F++ REKY+RFL+ +KDF A+RI+ V + A+V  LF+ H +LI+GF +FLP
Subjt:  SSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

A0A6I9UIE8 paired amphipathic helix protein Sin3-like 2 isoform X19.6e-1148.61Show/hide
Query:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        GS++K T  +ALSY+ +V++ F++ REKY+RFL  +KDF A+R++   + A+V  LF+ HP+LI GF +FLP
Subjt:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

A0A6I9UUD7 paired amphipathic helix protein Sin3-like 2 isoform X29.6e-1148.61Show/hide
Query:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        GS++K T  +ALSY+ +V++ F++ REKY+RFL  +KDF A+R++   + A+V  LF+ HP+LI GF +FLP
Subjt:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

SwissProt top hitse value%identityAlignment
O04539 Paired amphipathic helix protein Sin3-like 43.0e-0938.16Show/hide
Query:  MARHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        M    S++K T  +AL+Y+  V+++F++ R+KY+ FL+ +KDF A+R++   +  +V  LF+ + +LI GF +FLP
Subjt:  MARHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

O48686 Paired amphipathic helix protein Sin3-like 31.0e-0938.16Show/hide
Query:  MARHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        M   GS++K T  +AL+Y+  V+++F++ R KY+ FL+ +K+F ++R++   +  +V  LF+ H +LI GF +FLP
Subjt:  MARHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

Q9LFQ3 Paired amphipathic helix protein Sin3-like 23.0e-0939.44Show/hide
Query:  SSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        +++K T  +AL+Y+  V+E F++ R+KY+ FL+ +KDF A++ +   + ++V  LF+ H +LI+GF +FLP
Subjt:  SSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

Q9SRH9 Paired amphipathic helix protein Sin3-like 11.4e-1148.57Show/hide
Query:  SRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        S+K T  +ALSY+  V+E F++ REKY+RFL+ +KDF A+R +   + A+V  LF+ H +LI+GF +FLP
Subjt:  SRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

Q9XIE1 Paired amphipathic helix protein Sin3-like 53.9e-0940.28Show/hide
Query:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        G++   T  +AL+Y+  V++ F++++EKYE FL  +KDF A+R++   + A+V +LF+ + DL+ GF +FLP
Subjt:  GSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

Arabidopsis top hitse value%identityAlignment
AT1G23810.1 Paired amphipathic helix (PAH2) superfamily protein8.6e-1240.48Show/hide
Query:  KPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLPNKKSL---LKCLKQGD
        +PT+ +A SY++ V+E F ++  KYE  L+ + DF ARR+N   + A+V  L +DH +L++GF  FL    S    LK   QGD
Subjt:  KPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLPNKKSL---LKCLKQGD

AT1G24190.1 SIN3-like 37.3e-1138.16Show/hide
Query:  MARHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        M   GS++K T  +AL+Y+  V+++F++ R KY+ FL+ +K+F ++R++   +  +V  LF+ H +LI GF +FLP
Subjt:  MARHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

AT1G24190.2 SIN3-like 37.3e-1138.16Show/hide
Query:  MARHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        M   GS++K T  +AL+Y+  V+++F++ R KY+ FL+ +K+F ++R++   +  +V  LF+ H +LI GF +FLP
Subjt:  MARHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

AT3G01320.1 SIN3-like 11.0e-1248.57Show/hide
Query:  SRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        S+K T  +ALSY+  V+E F++ REKY+RFL+ +KDF A+R +   + A+V  LF+ H +LI+GF +FLP
Subjt:  SRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP

AT3G01320.2 SIN3-like 11.0e-1248.57Show/hide
Query:  SRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP
        S+K T  +ALSY+  V+E F++ REKY+RFL+ +KDF A+R +   + A+V  LF+ H +LI+GF +FLP
Subjt:  SRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGACACGGAAGTTCCCGAAAGCCAACCATGGCGGAAGCCCTATCATATATTTTGCGAGTGAGGGAAAGATTTCGAGAAGACAGAGAAAAGTATGAACGTTTCCT
TCAAGCTGTCAAGGATTTCTGGGCCCGAAGAATTAATGTTGTGGAACTCTATGCAAAAGTAGCAAACTTGTTTCAAGACCACCCAGATCTTATTTGGGGCTTCCTTAGTT
TCTTGCCCAACAAGAAATCACTTCTCAAATGTTTGAAACAAGGTGATATAGATCTCCAGCTGGTTTTGCCTCAATGGGATTCCGACATCTATCTTAATTTGCAACTAGTT
CATTATTATGGCTACAGTTTGAGGATGATCCTGTTCTGGTCCCAAAGGAAACGTCCTGGTCCGAATATTACCCAGATGAATAGTTTGAACCCGTTTACCCCCACAACAGA
CAAGGCTTATCATTGA
mRNA sequenceShow/hide mRNA sequence
CTTTGATTTCCCTTCAATGGCGAGACACGGAAGTTCCCGAAAGCCAACCATGGCGGAAGCCCTATCATATATTTTGCGAGTGAGGGAAAGATTTCGAGAAGACAGAGAAA
AGTATGAACGTTTCCTTCAAGCTGTCAAGGATTTCTGGGCCCGAAGAATTAATGTTGTGGAACTCTATGCAAAAGTAGCAAACTTGTTTCAAGACCACCCAGATCTTATT
TGGGGCTTCCTTAGTTTCTTGCCCAACAAGAAATCACTTCTCAAATGTTTGAAACAAGGTGATATAGATCTCCAGCTGGTTTTGCCTCAATGGGATTCCGACATCTATCT
TAATTTGCAACTAGTTCATTATTATGGCTACAGTTTGAGGATGATCCTGTTCTGGTCCCAAAGGAAACGTCCTGGTCCGAATATTACCCAGATGAATAGTTTGAACCCGT
TTACCCCCACAACAGACAAGGCTTATCATTGAGGAGTGGATTGGATTGGATTGAGAAGCAAAAAGTACATTGTGCCTTACTTGGAGGAGGAACATCAATCTTCTCGATTT
GATTTACAAATTTAAAAAACAAGCAATGTTTCTTTGAGATTATCTTAGAGGAGATAGTAATTTCAAAGCAGCAATCAAATACCTTCAACCCTTCTTTTCATTTGTATCTT
TTAATATTATACTTTTATACAATAGGTGACAAAAAAACATTTTTTTTCAATCTGTTTTCTTTTAAATTACTCTATTTGAATCCTATCAATAAATTGATATTTCTAGTGAT
A
Protein sequenceShow/hide protein sequence
MARHGSSRKPTMAEALSYILRVRERFREDREKYERFLQAVKDFWARRINVVELYAKVANLFQDHPDLIWGFLSFLPNKKSLLKCLKQGDIDLQLVLPQWDSDIYLNLQLV
HYYGYSLRMILFWSQRKRPGPNITQMNSLNPFTPTTDKAYH