CuGenDBv2

Gene ID	PI0013306
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Exportin-T
Genome location	chr05:8846430..8847932
RNA-Seq Expression	PI0013306
Synteny	PI0013306
Gene Ontology terms	GO:0071528 - tRNA re-export from nucleus (biological process) GO:0005643 - nuclear pore (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0016363 - nuclear matrix (cellular component) GO:0000049 - tRNA binding (molecular function)
InterPro domains	IPR011989 - Armadillo-like helical

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6575443.1 Exportin-T, partial [Cucurbita argyrosperma subsp. sororia]

3.3e-19

63.92

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLLQVLVAFPKI PL+TKVLSFIHRMVET   SVFPYLPK               GF      + C+ +TSVHGILEDVFPTI S+IF+IIP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

XP_004141704.1 exportin-T [Cucumis sativus]

3.9e-20

64.95

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLLQVLVAFPK+ PL+TKVLSFIHRMVET  TSVFPYLPK               GF      + C+ +TSVHGILEDVFPTI S+IFNIIP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

XP_008462297.1 PREDICTED: exportin-T [Cucumis melo]

1.9e-19

61.86

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLLQVL+AFPK+ PL+TKVLSFIHRMVET   SVFPYLPK               GF      + C+ +TSVHGILEDVFPTI S+IFN+IP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

XP_023548548.1 exportin-T-like [Cucurbita pepo subsp. pepo]

3.3e-19

63.92

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLLQVLVAFPKI PL+TKVLSFIHRMVET   SVFPYLPK               GF      + C+ +TSVHGILEDVFPTI S+IF+IIP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

XP_038898562.1 exportin-T [Benincasa hispida]

8.7e-20

64.95

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLLQVLVAFPKI PL+TKVLSFIHRMVET   SVFPYLPK               GF      + C+ +TSVHGILEDVFPTI S+IFNIIP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6Z9 Exportin-T

1.9e-20

64.95

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLLQVLVAFPK+ PL+TKVLSFIHRMVET  TSVFPYLPK               GF      + C+ +TSVHGILEDVFPTI S+IFNIIP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

A0A1S3CI57 Exportin-T

9.4e-20

61.86

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLLQVL+AFPK+ PL+TKVLSFIHRMVET   SVFPYLPK               GF      + C+ +TSVHGILEDVFPTI S+IFN+IP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

A0A5A7UYX4 Exportin-T

9.4e-20

61.86

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLLQVL+AFPK+ PL+TKVLSFIHRMVET   SVFPYLPK               GF      + C+ +TSVHGILEDVFPTI S+IFN+IP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

A0A6J1D5T7 Exportin-T

6.1e-19

63.54

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIP
        QTLDVLLQVLVAFPKI PL++KVLSFIHRMV+T   SVFPYLPK               GF      + C+ +TSVHGILEDVFPTI S+IFNIIP
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIP

A0A6J1GNA6 Exportin-T

1.6e-19

63.92

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLLQVLVAFPKI PL+TKVLSFIHRMVET   SVFPYLPK               GF      + C+ +TSVHGILEDVFPTI S+IF+IIP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

SwissProt top hits

e value

%identity

Alignment

Q7PC79 Exportin-T

4.7e-16

47.42

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLL+VL+ FPK+ PL++KV SFIHRMV+T  ++VFPYLPK               GF      + C+ N+++H ILE+V+P +  +IFN+IP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

Q8H3A7 Exportin-T

1.5e-09

31.71

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPKG-------------------FGAVACR-NTSVHGILEDVFPTINSQIFNIIPKILF
        +TLDV+LQVL++FP + PL++K++SF+HRMVE    SV P +P                        + C+  +S + +LEDVFP I S +  I+    F
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPKG-------------------FGAVACR-NTSVHGILEDVFPTINSQIFNIIPKILF

Query:  LRTGSNMRRYVTDIHKLIKDWCA
            ++    + ++ +L K + A
Subjt:  LRTGSNMRRYVTDIHKLIKDWCA

Arabidopsis top hits

e value

%identity

Alignment

AT1G72560.1 ARM repeat superfamily protein

3.3e-17

47.42

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLL+VL+ FPK+ PL++KV SFIHRMV+T  ++VFPYLPK               GF      + C+ N+++H ILE+V+P +  +IFN+IP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

AT1G72560.2 ARM repeat superfamily protein

3.3e-17

47.42

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLL+VL+ FPK+ PL++KV SFIHRMV+T  ++VFPYLPK               GF      + C+ N+++H ILE+V+P +  +IFN+IP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

AT1G72560.3 ARM repeat superfamily protein

3.3e-17

47.42

Show/hide

Query:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK
        QTLDVLL+VL+ FPK+ PL++KV SFIHRMV+T  ++VFPYLPK               GF      + C+ N+++H ILE+V+P +  +IFN+IP+
Subjt:  QTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPK---------------GF----GAVACR-NTSVHGILEDVFPTINSQIFNIIPK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAATCTTTTTTTTTTTTGAAAGATTACAAGGTGTATTGTACATTCTTCTCTTCAATTCAGACATTGGATGTTCTTCTCCAAGTTCTTGTTGCGTTTCCTAAAATAGT
GCCTCTACAGACTAAGGTCCTCTCTTTTATACATCGAATGGTGGAAACTTTCCGCACATCTGTTTTTCCCTATCTTCCAAAAGGCTTTGGAGCAGTCGCTTGCAGAAACA
CTTCGGTCCATGGGATTTTGGAGGATGTATTTCCAACAATAAATAGTCAGATTTTCAACATTATACCAAAGATTCTCTTCCTCAGGACCGGAAGCAATATGAGGCGTTAT
GTTACAGATATTCATAAATTAATTAAAGACTGGTGTGCCAGGGCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKSFFFLKDYKVYCTFFSSIQTLDVLLQVLVAFPKIVPLQTKVLSFIHRMVETFRTSVFPYLPKGFGAVACRNTSVHGILEDVFPTINSQIFNIIPKILFLRTGSNMRRY
VTDIHKLIKDWCARA

PI0013306 (gene) of Melon (PI 482460) v1 genome