CuGenDBv2

Gene ID	PI0013363
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	S4 RNA-binding domain-containing protein
Genome location	chr06:8623360..8631802
RNA-Seq Expression	PI0013363
Synteny	PI0013363
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

9.4e-159

90.68

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Query:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA + SIGALWSLRRAAQ SSFR PLA+NL K+ FH+ARFPSSPSSPLG SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNF+FH C+HGDFLG+ILGTGIAREKLGDIILQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT ITKNG+ILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_004146247.1 uncharacterized protein LOC101221944 [Cucumis sativus]

9.7e-164

95.34

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Query:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAAT+TSI ALWSLRRAAQFSSFRRPLA+NLN+L F++ARF   PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
Subjt:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD+ISALSITGNF FHPCSHGDFLGSILGTGIAREKLGDI+LQEETGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR
        VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT ITKNG+ILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEINSTKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_008456024.1 PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo]

2.0e-164

94.72

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Query:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAAT+T+IGALWSLR A+QFSSFRRPL VNLN+LYFH+ RF   PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
Subjt:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPD+ISALSITGNF FHPCSHGDFLGSILGTGIAREKLGDII+QEETGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR
        VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTPITKNG+ILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEINSTKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_022981895.1 uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]

2.1e-158

90.99

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Query:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA + SIGALWSLRRAAQ SS R PLAVNL+K+ FH+ARFP+SPSSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNFMFH C+HGDFLG+ILGTGIAREKLGDIILQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR
        VPELVDFL+SSL KVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWT ITKNG+ILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_038899605.1 putative RNA-binding protein YlmH [Benincasa hispida]

2.0e-161

93.4

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Query:  STSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        +TSIGA WSLRRAAQ SSFR PLAVNLNKL FH+ARFPSSPSSPLG+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRR VLHTNFLT
Subjt:  STSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVIVPEL
        PPVVKES+LA+QKLADVKAIAQGGYPEAERCRISVGHADEL SDPD++SALSITGNFMFHPCSHGDFLG+ILGTGIAREKLGDIILQEE GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGRLKIG
        VDFL SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTPITKNG+ILKTGDIVSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EINSTKKGKFAVELIRYV
Subjt:  EINSTKKGKFAVELIRYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

4.7e-164

95.34

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Query:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAAT+TSI ALWSLRRAAQFSSFRRPLA+NLN+L F++ARF   PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
Subjt:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD+ISALSITGNF FHPCSHGDFLGSILGTGIAREKLGDI+LQEETGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR
        VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT ITKNG+ILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEINSTKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

A0A1S3C3I2 putative RNA-binding protein YlmH isoform X2

9.4e-165

94.72

Show/hide

Query:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAAT+T+IGALWSLR A+QFSSFRRPL VNLN+LYFH+ RF   PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
Subjt:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPD+ISALSITGNF FHPCSHGDFLGSILGTGIAREKLGDII+QEETGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR
        VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTPITKNG+ILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEINSTKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

1.9e-157

92.14

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Query:  STSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        +TSIGALWSLRRAAQ SSFR PLA+NL+   FH ARFP SPSSP G+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLT
Subjt:  STSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVIVPEL
        PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD+ISALSITGNF FHPCSHGDFLGSILGTGIAREKLGDIILQ E GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGRLKIG
        VDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTP+TKNG+ LKTGD+VSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EINSTKKGKF+VELIRYV
Subjt:  EINSTKKGKFAVELIRYV

A0A6J1FU11 uncharacterized protein LOC111446880 isoform X2

8.6e-158

90.37

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Query:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA + SIGALWSLRRAA+ SSFR PLAVNL K+ FH+ARFPSSPSSPLG SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNF+F  C+HGDFLG+ILGTGIAREKLGDIILQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT ITKNG+ILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

1.0e-158

90.99

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Query:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA + SIGALWSLRRAAQ SS R PLAVNL+K+ FH+ARFP+SPSSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNFMFH C+HGDFLG+ILGTGIAREKLGDIILQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR
        VPELVDFL+SSL KVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWT ITKNG+ILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

4.0e-19

30.53

Show/hide

Query:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETG
        T+FL P   +E ++  A+   ADV     GGY  AER R ++   + +T +     + A ++     F    H   LG+++G G+ R+K GDI+   ET 
Subjt:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETG

Query:  AQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSV
         Q+++  +  DF+ + L + G   VS  +I L+ L       +      +SLR+DA+ ++  + SR K   L+ +G V+VNW  +     I+  GD++S+
Subjt:  AQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSV

Query:  SGKGRLKIGEI-NSTKKGKFAVELIR
         G GR  + +I   TKK K+ V   R
Subjt:  SGKGRLKIGEI-NSTKKGKFAVELIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

5.5e-117

66.88

Show/hide

Query:  TSIGALWSLRRAAQFSSFRRPLAVNLN-KLYFHDARFPSSPSSPLGTSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNF
        TS+   W + R A F S      ++ N K    +   P+  S PL  S +  C   +A+KGD+D LL GVGD+ V  +VKQIL MA+R+ S+REVLHT+F
Subjt:  TSIGALWSLRRAAQFSSFRRPLAVNLN-KLYFHDARFPSSPSSPLGTSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVIVP
        LTPP+VKES+  ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPD+++ALSITGNF F PCSHGDFLG+ILGTGI+REKLGDI++QEE GAQV+IVP
Subjt:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVIVP

Query:  ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGRLK
        ELVDF++++L KVGNV V+C++IPL ALEYEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  +TKNG+I+KTGD+VSVSGKGRLK
Subjt:  ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFAVELIRYV
        IGEIN TKKGKFAVE+IRY+
Subjt:  IGEINSTKKGKFAVELIRYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGCAACCTCAACGAGCATTGGAGCTCTGTGGAGTTTAAGAAGAGCAGCTCAATTTTCGAGTTTCCGAAGACCCCTTGCCGTTAATCTCAATAAGCTCTACTTTCA
CGACGCCCGGTTTCCCTCTTCTCCCTCTTCTCCTCTGGGGACCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAG
ATAAAGGTGTTATTGTAGACGTGAAACAAATTCTTGTGATGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACCCCACCTGTGGTGAAAGAG
TCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCATGCAGATGAACTAACAAG
TGATCCAGACGTAATTTCAGCATTAAGTATCACGGGAAATTTTATGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAA
AGCTTGGTGATATCATACTCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTT
TCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTATAGCAAGTGCTGGATT
CAAGATTTCACGATCTAAACTAGTGGATTTAATCAGTAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGATCCATTTTAAAGACTGGTGATATTGTTT
CTGTTAGTGGCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTATCAGATATGTGTAA

mRNA sequence

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GTTTGGAACGGTTGCGCGTTGACACTCACTGAGCCATGGCCGCAACCTCAACGAGCATTGGAGCTCTGTGGAGTTTAAGAAGAGCAGCTCAATTTTCGAGTTTCCGAAGA
CCCCTTGCCGTTAATCTCAATAAGCTCTACTTTCACGACGCCCGGTTTCCCTCTTCTCCCTCTTCTCCTCTGGGGACCTCAGGAATATGCCAATTAGTGCAAGCTGTAAA
GGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACAAATTCTTGTGATGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCC
ATACAAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGC
CGGATTTCTGTTGGTCATGCAGATGAACTAACAAGTGATCCAGACGTAATTTCAGCATTAAGTATCACGGGAAATTTTATGTTTCACCCTTGTTCACATGGGGACTTCCT
TGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATACTCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGA
TATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCA
TCTCTTAGGGTGGATGCTATAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAGTAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAA
AAATGGATCCATTTTAAAGACTGGTGATATTGTTTCTGTTAGTGGCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTA
TCAGATATGTGTAAGCTCTAGAGATATTGTCAGTTGGTGATGAACTGGGTAAGACGTCACAGGAGCCTCTTTGTGGGGTGAAATCAGGATTACTTCCTTAGGAATAACTA
AAGTAAGTCATTATTCAACATGAAATTAATCTGATTGTATATGTGAAAATCCGAACACCCATTCATCCATTCTTAAAAATTTCATTGGGAAAATCTGTCTCAGCATTTCA
ATGCCAGTGCCTTTTAAGTTCTTTTGTTTCTGGTTGTGTTGCCTTCTTTTCTGGAATGAGTTCGTTCAAACTAATGTTGTCAAAGGAGGGAATTTAAGCACAAAG

Protein sequence

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MAATSTSIGALWSLRRAAQFSSFRRPLAVNLNKLYFHDARFPSSPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKE
SMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVIVPELVDFLISSLRKVGNVTV
SCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGSILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV

PI0013363 (gene) of Melon (PI 482460) v1 genome