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PI0013423 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013423
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr11:19090328..19095963
RNA-Seq ExpressionPI0013423
SyntenyPI0013423
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060833.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]6.7e-0754.05Show/hide
Query:  MSDGEQLQFELDPEIERTFQRNRRRARQRQARRMEN--NNRNAPPPQAAQEPNAAYMAHDLDIPIRSYAAPNLY
        MS+GEQ +F +D EIER FQRNRR+ ++RQ     N  NN+ AP  QA Q  N  Y+AH+ D PIRS  +PNLY
Subjt:  MSDGEQLQFELDPEIERTFQRNRRRARQRQARRMEN--NNRNAPPPQAAQEPNAAYMAHDLDIPIRSYAAPNLY

KGN53867.1 hypothetical protein Csa_019118 [Cucumis sativus]5.3e-0449.02Show/hide
Query:  MSTRVFPHGAVEISSLDEKNVFKVNRQRLKVYHEDDEQTSSFIPKLIGKMI
        M   VF HGAVEI+SLDE NVFK+ RQRLK Y++D+     F+   +  ++
Subjt:  MSTRVFPHGAVEISSLDEKNVFKVNRQRLKVYHEDDEQTSSFIPKLIGKMI

TYK08803.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]6.7e-0754.05Show/hide
Query:  MSDGEQLQFELDPEIERTFQRNRRRARQRQARRMEN--NNRNAPPPQAAQEPNAAYMAHDLDIPIRSYAAPNLY
        MS+GEQ +F +D EIER FQRNRR+ ++RQ     N  NN+ AP  QA Q  N  Y+AH+ D PIRS  +PNLY
Subjt:  MSDGEQLQFELDPEIERTFQRNRRRARQRQARRMEN--NNRNAPPPQAAQEPNAAYMAHDLDIPIRSYAAPNLY

TYK25881.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]6.3e-0558.33Show/hide
Query:  SGGRKSEPLGMSTRVFPHGAVEISSLDEKNVFKVNRQRLKVYHEDDEQ
        +  R S P  +  ++FPHGA+EI+SLDEKN FKVNRQRLK Y+ED ++
Subjt:  SGGRKSEPLGMSTRVFPHGAVEISSLDEKNVFKVNRQRLKVYHEDDEQ

TrEMBL top hitse value%identityAlignment
A0A0A0KZS1 Uncharacterized protein2.6e-0449.02Show/hide
Query:  MSTRVFPHGAVEISSLDEKNVFKVNRQRLKVYHEDDEQTSSFIPKLIGKMI
        M   VF HGAVEI+SLDE NVFK+ RQRLK Y++D+     F+   +  ++
Subjt:  MSTRVFPHGAVEISSLDEKNVFKVNRQRLKVYHEDDEQTSSFIPKLIGKMI

A0A5A7UXZ2 Retrovirus-related Pol polyprotein from transposon 17.63.2e-0754.05Show/hide
Query:  MSDGEQLQFELDPEIERTFQRNRRRARQRQARRMEN--NNRNAPPPQAAQEPNAAYMAHDLDIPIRSYAAPNLY
        MS+GEQ +F +D EIER FQRNRR+ ++RQ     N  NN+ AP  QA Q  N  Y+AH+ D PIRS  +PNLY
Subjt:  MSDGEQLQFELDPEIERTFQRNRRRARQRQARRMEN--NNRNAPPPQAAQEPNAAYMAHDLDIPIRSYAAPNLY

A0A5D3C9B3 Retrovirus-related Pol polyprotein from transposon 17.69.7e-0454.55Show/hide
Query:  AAIESMMWDYCEEEA-SMLLNPEEFFED---LHGIESVNVVSGGRKSEPLGMSTR
        + IES+ WDYC+EEA + L + EEF ED    + +E VNVVSG RK EPLG+ T+
Subjt:  AAIESMMWDYCEEEA-SMLLNPEEFFED---LHGIESVNVVSGGRKSEPLGMSTR

A0A5D3CAB5 Retrovirus-related Pol polyprotein from transposon 17.63.2e-0754.05Show/hide
Query:  MSDGEQLQFELDPEIERTFQRNRRRARQRQARRMEN--NNRNAPPPQAAQEPNAAYMAHDLDIPIRSYAAPNLY
        MS+GEQ +F +D EIER FQRNRR+ ++RQ     N  NN+ AP  QA Q  N  Y+AH+ D PIRS  +PNLY
Subjt:  MSDGEQLQFELDPEIERTFQRNRRRARQRQARRMEN--NNRNAPPPQAAQEPNAAYMAHDLDIPIRSYAAPNLY

A0A5D3DQC6 Retrovirus-related Pol polyprotein from transposon 17.63.0e-0558.33Show/hide
Query:  SGGRKSEPLGMSTRVFPHGAVEISSLDEKNVFKVNRQRLKVYHEDDEQ
        +  R S P  +  ++FPHGA+EI+SLDEKN FKVNRQRLK Y+ED ++
Subjt:  SGGRKSEPLGMSTRVFPHGAVEISSLDEKNVFKVNRQRLKVYHEDDEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACTGTATACCGCATTAAGATTAGAACGCCTAATGAACCATTTAGTAACCAAAATCCCTGCGTTCGACCCTGGCTTACCCAGGAAACCTCTTGCTCTGCTTATACT
TTGGCGAGCAAGAGGAAAACTTGTACTTAACGCATTATCATTAGTAAGCATGCAACGCATAGAAGTTCAATTTCAGCTGAATCGTGCGTTCAAACTCGAAGAACGTGGGA
ACAAGTTTATGAGTGACGGTGAACAACTGCAATTCGAACTTGACCCTGAAATTGAGCGAACCTTTCAGCGTAATCGGCGAAGAGCAAGGCAAAGACAAGCAAGAAGAATG
GAAAACAATAATAGAAATGCCCCTCCGCCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACATACCAATTAGATCATATGCGGCACCCAACCT
CTACATTTCTAATCTTGTACATTTCTCTTTAACTGACAATGTTTCTTCCTCGCAGAATAAAGATGTGTCAAGCAAGGGCATGGAGAGCAAGGGGCAACAGAATCAACCGA
GTGAAGCCGCAATAGAATCCATGATGTGGGATTATTGCGAGGAAGAAGCTTCTATGTTGCTCAACCCTGAAGAATTCTTTGAAGATCTCCATGGAATAGAAAGCGTAAAC
GTCGTGTCTGGCGGGAGGAAATCAGAACCTTTGGGTATGTCAACCCGAGTCTTCCCGCATGGTGCTGTGGAGATCTCATCGCTGGACGAGAAGAATGTTTTCAAGGTAAA
TAGGCAAAGACTAAAGGTGTACCATGAAGACGATGAACAAACTTCATCCTTCATCCCAAAACTCATCGGAAAGATGATCGGATCTTCAAGCACGCATCAAGATCGCATCA
AAGTTCATTCTGATGGTCCTGAATCAGAGCGACCTACATCGCGAGGAAGTGGCGAACAAGGAATGCCACAGTACACCCACCTGAAGCACGGTAAAGGAAAGGTGTTGCTA
AAACCTCTGCCAGAAGCATCTGAACTTTTCGAGGAAATGGAGGTTGATAATTTGGATAAGGTTGCCGTACTTGAGTTTCTCAACGAGCGGCTGAGAAAGCAAAAGGAAGC
ACACCTGAAGAGGACAAAGGAAGTTCGCCGCAGGAAGGATGAATGCGAGCGTTTGAGATTTGAGGAACGACAAAAGGAGGGGAGTAAGTCCCTAGAAATACGCTCACCGC
CTAACGAGGTCGTAGAACTTCATAAGAAAATATCAGACATGCTCGCTCAAGTCTCCATTGCCAAAACAAGAAAAACAATAGAGGCGGTCAAATCCGCCTTAAAAAGGAAG
GAAGAAAAAAAGAAAATGCTCGCGGACTTGAGCGAGCAAGTGGTGGAGCTCCCTGCGAAGATGAAGGCTTTGGAGCCAGAGAGAGACCTCGAGGTCATCGCTGAAGAACT
CGAGGATGAGCTGGAGGCGATGAGCCCACTTGACCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATACTGTATACCGCATTAAGATTAGAACGCCTAATGAACCATTTAGTAACCAAAATCCCTGCGTTCGACCCTGGCTTACCCAGGAAACCTCTTGCTCTGCTTATACT
TTGGCGAGCAAGAGGAAAACTTGTACTTAACGCATTATCATTAGTAAGCATGCAACGCATAGAAGTTCAATTTCAGCTGAATCGTGCGTTCAAACTCGAAGAACGTGGGA
ACAAGTTTATGAGTGACGGTGAACAACTGCAATTCGAACTTGACCCTGAAATTGAGCGAACCTTTCAGCGTAATCGGCGAAGAGCAAGGCAAAGACAAGCAAGAAGAATG
GAAAACAATAATAGAAATGCCCCTCCGCCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACATACCAATTAGATCATATGCGGCACCCAACCT
CTACATTTCTAATCTTGTACATTTCTCTTTAACTGACAATGTTTCTTCCTCGCAGAATAAAGATGTGTCAAGCAAGGGCATGGAGAGCAAGGGGCAACAGAATCAACCGA
GTGAAGCCGCAATAGAATCCATGATGTGGGATTATTGCGAGGAAGAAGCTTCTATGTTGCTCAACCCTGAAGAATTCTTTGAAGATCTCCATGGAATAGAAAGCGTAAAC
GTCGTGTCTGGCGGGAGGAAATCAGAACCTTTGGGTATGTCAACCCGAGTCTTCCCGCATGGTGCTGTGGAGATCTCATCGCTGGACGAGAAGAATGTTTTCAAGGTAAA
TAGGCAAAGACTAAAGGTGTACCATGAAGACGATGAACAAACTTCATCCTTCATCCCAAAACTCATCGGAAAGATGATCGGATCTTCAAGCACGCATCAAGATCGCATCA
AAGTTCATTCTGATGGTCCTGAATCAGAGCGACCTACATCGCGAGGAAGTGGCGAACAAGGAATGCCACAGTACACCCACCTGAAGCACGGTAAAGGAAAGGTGTTGCTA
AAACCTCTGCCAGAAGCATCTGAACTTTTCGAGGAAATGGAGGTTGATAATTTGGATAAGGTTGCCGTACTTGAGTTTCTCAACGAGCGGCTGAGAAAGCAAAAGGAAGC
ACACCTGAAGAGGACAAAGGAAGTTCGCCGCAGGAAGGATGAATGCGAGCGTTTGAGATTTGAGGAACGACAAAAGGAGGGGAGTAAGTCCCTAGAAATACGCTCACCGC
CTAACGAGGTCGTAGAACTTCATAAGAAAATATCAGACATGCTCGCTCAAGTCTCCATTGCCAAAACAAGAAAAACAATAGAGGCGGTCAAATCCGCCTTAAAAAGGAAG
GAAGAAAAAAAGAAAATGCTCGCGGACTTGAGCGAGCAAGTGGTGGAGCTCCCTGCGAAGATGAAGGCTTTGGAGCCAGAGAGAGACCTCGAGGTCATCGCTGAAGAACT
CGAGGATGAGCTGGAGGCGATGAGCCCACTTGACCAATGA
Protein sequenceShow/hide protein sequence
MILYTALRLERLMNHLVTKIPAFDPGLPRKPLALLILWRARGKLVLNALSLVSMQRIEVQFQLNRAFKLEERGNKFMSDGEQLQFELDPEIERTFQRNRRRARQRQARRM
ENNNRNAPPPQAAQEPNAAYMAHDLDIPIRSYAAPNLYISNLVHFSLTDNVSSSQNKDVSSKGMESKGQQNQPSEAAIESMMWDYCEEEASMLLNPEEFFEDLHGIESVN
VVSGGRKSEPLGMSTRVFPHGAVEISSLDEKNVFKVNRQRLKVYHEDDEQTSSFIPKLIGKMIGSSSTHQDRIKVHSDGPESERPTSRGSGEQGMPQYTHLKHGKGKVLL
KPLPEASELFEEMEVDNLDKVAVLEFLNERLRKQKEAHLKRTKEVRRRKDECERLRFEERQKEGSKSLEIRSPPNEVVELHKKISDMLAQVSIAKTRKTIEAVKSALKRK
EEKKKMLADLSEQVVELPAKMKALEPERDLEVIAEELEDELEAMSPLDQ