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PI0013428 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013428
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr07:16888829..16889095
RNA-Seq ExpressionPI0013428
SyntenyPI0013428
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]1.1e-2980.46Show/hide
Query:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLI
        MCDASDVV+GAMLGQK DKVI+PIY  SKT  E QENYTTT+KELL VVFAIEK+ SYIVGSKVT+HSDH  IRYLMVKKDA+P+LI
Subjt:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLI

KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]3.6e-2878.41Show/hide
Query:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        MCDASDVVVG M GQK DKV  PIYYA KT  E +ENYTT +KELL +VFAIEKFRSYIVGSKVT+HSDHS IRYLM KKDAK  LIR
Subjt:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

TYK26567.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]3.6e-2878.41Show/hide
Query:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        MCDASDVVVG M GQK DKV  PIYYA KT  E +ENYTT +KELL +VFAIEKFRSYIVGSKVT+HSDHS IRYLM KKDAK  LIR
Subjt:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

WP_217833163.1 Ty3/Gypsy family RNase HI domain-containing protein, partial [Synechococcus sp. PCC 7002]7.2e-2971.59Show/hide
Query:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        MCDAS+ VVGA+LGQ+ +K++HPIYYASKT    QENYTTT+KE+L +VFA++KFR+Y +GSKVT++SDHS I+YLMVKKDAKPRLIR
Subjt:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

XP_019100932.1 PREDICTED: uncharacterized protein LOC104789643 [Camelina sativa]1.8e-2772.73Show/hide
Query:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        MCDASD  VGAMLGQ+ DK +H IYYAS+T  E Q NY TT+KELL VVFA EKFRSY+VGSKV VH+DH+ +RYLM KKDAKPRL+R
Subjt:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

TrEMBL top hitse value%identityAlignment
A0A1S4BYQ6 uncharacterized protein LOC1078132414.3e-2765.91Show/hide
Query:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        MCDASDV VGA+LGQ+I+K+ HP+YYASKT  E Q NYT T+KELL +VFA+EKFR Y++G+KV +H+DH+ +RYLM KKD+K RL+R
Subjt:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

A0A392QTZ6 RT_RNaseH_2 domain-containing protein (Fragment)4.3e-2771.59Show/hide
Query:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        MCDASD VVGA+LGQ+ DK  H IYYAS+T  E Q NYTTT+KELL VVFA +KFRSY+VG+KV V++DHS I+YL+ KKDAKPRLIR
Subjt:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

A0A5A7V586 Retrovirus-related Pol polyprotein from transposon 17.61.7e-2878.41Show/hide
Query:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        MCDASDVVVG M GQK DKV  PIYYA KT  E +ENYTT +KELL +VFAIEKFRSYIVGSKVT+HSDHS IRYLM KKDAK  LIR
Subjt:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

A0A5A7V8R9 RT_RNaseH domain-containing protein5.4e-3080.46Show/hide
Query:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLI
        MCDASDVV+GAMLGQK DKVI+PIY  SKT  E QENYTTT+KELL VVFAIEK+ SYIVGSKVT+HSDH  IRYLMVKKDA+P+LI
Subjt:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLI

A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.61.7e-2878.41Show/hide
Query:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        MCDASDVVVG M GQK DKV  PIYYA KT  E +ENYTT +KELL +VFAIEKFRSYIVGSKVT+HSDHS IRYLM KKDAK  LIR
Subjt:  MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.2e-1041.86Show/hide
Query:  DASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        DASDV +GA+L Q      HP+ Y S+T  E + NY+T +KELL +V+A + FR Y++G    + SDH  + +L   KD   +L R
Subjt:  DASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

P10394 Retrovirus-related Pol polyprotein from transposon 4121.1e-0637.21Show/hide
Query:  DASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        DAS    GA+L Q  +    P+ YAS+  T+ + N +TT++EL  + +AI  FR YI G   TV +DH  + YL    +   +L R
Subjt:  DASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy4.4e-0528.74Show/hide
Query:  DASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSK-VTVHSDHSTIRYLMVKKDAKPRLIR
        DAS   +GA+L Q+      PI   S+T  + ++NY T ++ELL +V+A+ K ++++ GS+ + + +DH  + + +  ++   ++ R
Subjt:  DASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSK-VTVHSDHSTIRYLMVKKDAKPRLIR

P20825 Retrovirus-related Pol polyprotein from transposon 2972.5e-0837.21Show/hide
Query:  DASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR
        DAS++ +GA+L Q      HPI + S+T  + + NY+  +KELL +V+A + FR Y++G +  + SDH  +R+L   K+   +L R
Subjt:  DASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.6e-0729.89Show/hide
Query:  DASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGS-KVTVHSDHSTIRYLMVKKDAKPRLIR
        DAS+  +GA+L Q       PI Y S++  + +ENY T +KE+L ++++++  R+Y+ G+  + V++DH  + + +  ++   +L R
Subjt:  DASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGS-KVTVHSDHSTIRYLMVKKDAKPRLIR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGATGCAAGTGATGTGGTGGTAGGGGCTATGCTGGGTCAAAAGATAGACAAAGTGATCCACCCTATATACTATGCGAGCAAGACTCGCACTGAGGTTCAAGAGAA
CTATACCACTACAAAGAAGGAATTGCTCGTAGTAGTTTTTGCGATAGAAAAGTTTAGGAGTTATATTGTTGGCTCCAAAGTTACGGTACACTCTGATCACTCTACGATTA
GATACCTCATGGTGAAGAAAGATGCCAAGCCGCGATTAATAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGATGCAAGTGATGTGGTGGTAGGGGCTATGCTGGGTCAAAAGATAGACAAAGTGATCCACCCTATATACTATGCGAGCAAGACTCGCACTGAGGTTCAAGAGAA
CTATACCACTACAAAGAAGGAATTGCTCGTAGTAGTTTTTGCGATAGAAAAGTTTAGGAGTTATATTGTTGGCTCCAAAGTTACGGTACACTCTGATCACTCTACGATTA
GATACCTCATGGTGAAGAAAGATGCCAAGCCGCGATTAATAAGATAG
Protein sequenceShow/hide protein sequence
MCDASDVVVGAMLGQKIDKVIHPIYYASKTRTEVQENYTTTKKELLVVVFAIEKFRSYIVGSKVTVHSDHSTIRYLMVKKDAKPRLIR