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PI0013438 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013438
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr02:8890996..8892068
RNA-Seq ExpressionPI0013438
SyntenyPI0013438
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038932.1 uncharacterized protein E6C27_scaffold84G00030 [Cucumis melo var. makuwa]3.8e-0752.73Show/hide
Query:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMN
        +P++EL+ RV+TLEVN  KTG+ ERGD+  G V Y+EE V  L+NS K++++M+N
Subjt:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMN

KAA0054039.1 Gag-pro-like protein [Cucumis melo var. makuwa]2.5e-0650Show/hide
Query:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND
        +P++ L+ RV+TLE    +TGS ERG++L GSVA++EE V+ L+NS K++++M+ND
Subjt:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND

KAA0055407.1 uncharacterized protein E6C27_scaffold80G002530 [Cucumis melo var. makuwa]4.2e-0650Show/hide
Query:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND
        + ++EL+ RV+TLE    +TGS ERGD+  GSVA++EE V+ L+NS K++++M+ND
Subjt:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND

KAA0062302.1 uncharacterized protein E6C27_scaffold154G00490 [Cucumis melo var. makuwa]6.6e-0751.79Show/hide
Query:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND
        +P++EL+ RV TL+ N  +T S ERGD+ MGSVA++EE V+ L++S K++++MMND
Subjt:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND

TYK02215.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-0650.91Show/hide
Query:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMN
        +P++EL+ RV TLE N  +TGS E GD+ MGSVA++EE V+ L++S K++++M+N
Subjt:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMN

TrEMBL top hitse value%identityAlignment
A0A5A7T621 Uncharacterized protein1.9e-0752.73Show/hide
Query:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMN
        +P++EL+ RV+TLEVN  KTG+ ERGD+  G V Y+EE V  L+NS K++++M+N
Subjt:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMN

A0A5A7UKK2 Gag-pro-like protein1.2e-0650Show/hide
Query:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND
        +P++ L+ RV+TLE    +TGS ERG++L GSVA++EE V+ L+NS K++++M+ND
Subjt:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND

A0A5A7ULF5 Retrotrans_gag domain-containing protein2.1e-0650Show/hide
Query:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND
        + ++EL+ RV+TLE    +TGS ERGD+  GSVA++EE V+ L+NS K++++M+ND
Subjt:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND

A0A5D3BSR9 Reverse transcriptase1.6e-0650.91Show/hide
Query:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMN
        +P++EL+ RV TLE N  +TGS E GD+ MGSVA++EE V+ L++S K++++M+N
Subjt:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMN

A0A5D3DTJ0 Asp_protease domain-containing protein3.2e-0751.79Show/hide
Query:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND
        +P++EL+ RV TL+ N  +T S ERGD+ MGSVA++EE V+ L++S K++++MMND
Subjt:  MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGTCAAAGAGCTAATGACAAGGGTTGAGACCCTAGAAGTAAACACTACAAAAACTGGTAGCTCTGAGCGTGGGGACAACTTGATGGGCTCTGTTGCCTATATGGA
AGAGCATGTCGAAGCATTAAACAACTCACATAAGTCGATGATTCAAATGATGAACGACGATAAAACTGGGATCATTGAGTGGACAGATGGATTTTGTGGTTGTGAAGATG
GATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGTCAAAGAGCTAATGACAAGGGTTGAGACCCTAGAAGTAAACACTACAAAAACTGGTAGCTCTGAGCGTGGGGACAACTTGATGGGCTCTGTTGCCTATATGGA
AGAGCATGTCGAAGCATTAAACAACTCACATAAGTCGATGATTCAAATGATGAACGACGATAAAACTGGGATCATTGAGTGGACAGATGGATTTTGTGGTTGTGAAGATG
GATGA
Protein sequenceShow/hide protein sequence
MPVKELMTRVETLEVNTTKTGSSERGDNLMGSVAYMEEHVEALNNSHKSMIQMMNDDKTGIIEWTDGFCGCEDG