; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0013476 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013476
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr11:9957413..9959101
RNA-Seq ExpressionPI0013476
SyntenyPI0013476
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036824.1 uncharacterized protein E6C27_scaffold20G001240 [Cucumis melo var. makuwa]3.5e-7335.56Show/hide
Query:  MVNTRRASYTPKVSVKKNSTPKDVGPSVKHLRTNKHEVRMRGTPKKATTTVHP--------------SPHESSHSVVTPSPSLSVSNVLPVVPDSPLSSS
        MVNT + SY  + S       +DV P+V    +     R+RG   K+T    P              S HES      P       + +P++     +S 
Subjt:  MVNTRRASYTPKVSVKKNSTPKDVGPSVKHLRTNKHEVRMRGTPKKATTTVHP--------------SPHESSHSVVTPSPSLSVSNVLPVVPDSPLSSS

Query:  ----TSASHRSIHSPSPLPAHDSDPKSPDHIPLARLLNRNPRTDVPESTSPHPSPPPVNQNTSDSPP---------------------------NIDDSH
              A+ R IHS S  P           IP  R L R+P T    S S HP       +  D+ P                             DD  
Subjt:  ----TSASHRSIHSPSPLPAHDSDPKSPDHIPLARLLNRNPRTDVPESTSPHPSPPPVNQNTSDSPP---------------------------NIDDSH

Query:  P--VPPP--NPTSVSSSN--PLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI
        P  +PPP  +PT+ S+      P  +QP   K +   + I+T++G +K+ +++  VPIDG+SFHHE +V +WK+VVQRRIADE  +S  H SC++IM LI
Subjt:  P--VPPP--NPTSVSSSN--PLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI

Query:  PQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFL-DIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAAR
         +A L+ T+SN+GPFYP+LIRE  VN+P  F +PSS  Y  IH+RG  F +S A +N FL + + +    + P  + LA  L+GGT++ WP  + +  A 
Subjt:  PQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFL-DIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAAR

Query:  LSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSY
        LS+KY  LHKIGI +W PS H+ ++S  L   ++ I     VD G+F  NQL RH+ S+ +K+PI LPRFF S LL  N  +L   +APG  P  +  SY
Subjt:  LSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSY

Query:  RLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS
        +LFQG+HV DI H +    S  +    D      G  +   LA +++++LT+ESR+L+  I+ L+ERR  +D+++  ++ L PS+
Subjt:  RLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS

KAA0051794.1 uncharacterized protein E6C27_scaffold60G002030 [Cucumis melo var. makuwa]4.5e-7339.4Show/hide
Query:  RNPRTDVPESTSPHPSPP-----PV--NQNTSDSPP--NIDDSHPVPP------------PNPTSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVP
        ++P  D+   +  H +P      PV   +  S+  P  N+DD  PV P             +P +   +  LP+ ++P   K +   + I+ ++  +++ 
Subjt:  RNPRTDVPESTSPHPSPP-----PV--NQNTSDSPP--NIDDSHPVPP------------PNPTSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVP

Query:  LHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFS
        L++  V IDG+SF+ E +V  WK VVQRRIAD+  +SD HHSC++IM LI +A L  T+SN+GPFYP+L++E  VN P+ F DPSSPDY T+H+RG  F+
Subjt:  LHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFS

Query:  VSPASLNAFLDIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQ
        +SP  +N                          GT++ WP  + + A  LSVKY ILHKIGI +W PS H+S+VS  L   ++ I     VD G+F  NQ
Subjt:  VSPASLNAFLDIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQ

Query:  LKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSYRLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALT
        L RH+ S+ +KLPI LPRFF S LL  N  +L  ++AP   P  L LSYRLFQG++VPDI+H +       L    D      G  +   L +++L++LT
Subjt:  LKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSYRLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALT

Query:  SESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS
        +ESRSLST I  ++ERR  IDS++  ++   PSS
Subjt:  SESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS

KAA0067563.1 uncharacterized protein E6C27_scaffold485G00260 [Cucumis melo var. makuwa]1.1e-7438.83Show/hide
Query:  KATTTVHPSPHESSHSVVT--PSPSLSVSNVLPVVPDSPLSSSTSASHRSIHSPSPLPAHDSDPKSPDHIPLARLLNRNPRTDVPESTSPHPSPPPVNQN
        K  TT    P + +  V++     S S   V    PD   +SS         SP   P  D    S  H+    +      + VPE  +   S      N
Subjt:  KATTTVHPSPHESSHSVVT--PSPSLSVSNVLPVVPDSPLSSSTSASHRSIHSPSPLPAHDSDPKSPDHIPLARLLNRNPRTDVPESTSPHPSPPPVNQN

Query:  TSD----SPPNIDDSHPVPPP-NPTSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPI-DGLSFHHEAHVHKWKYVVQRRIADESEVSD
          D    +P + +D  PV    +P++   +  +P+  +P   K +   + I+T++G +K+PL++  V I DG+SFH E +V +WK+VVQRRIAD+  +SD
Subjt:  TSD----SPPNIDDSHPVPPP-NPTSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPI-DGLSFHHEAHVHKWKYVVQRRIADESEVSD

Query:  DHHSCLAIMTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFL-DIVLLAEPPTFPTPDELASELAGGTVT
         +HSC++IM LI +  L  T+ ++G FYP+LIRE  VN+P+ F DPSS DY  +H+RG  F++S   +N FL + V +   P+ P+ + LAS L GGT++
Subjt:  DHHSCLAIMTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFL-DIVLLAEPPTFPTPDELASELAGGTVT

Query:  HWPTTSSLSAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEA
         WP  + + A  LSVKYAILHKIGI SW PS H S+VS  L   ++ I     VD G F  NQL RH+ S+ +KLPI LPRFF   LL  N  +L  ++A
Subjt:  HWPTTSSLSAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEA

Query:  PGLSPSKLHLSYRLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS
        P   P  L LSYRLFQG HVPDI+H++       +    D      G  +   LA ++L++L  ESRSL+T I  ++ERR  IDS++  ++   PSS
Subjt:  PGLSPSKLHLSYRLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS

TYK16303.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.0e-7439.43Show/hide
Query:  SPHESSHSVVTPSPSLSVSNVLPVVPDSPLSSSTSASHRSIHSPS-PLPAHDSDPKSPDHIPLARLLNRNPRTDVPE-STSPHPSPPPVNQNTSDSPPNI
        SP  SS +  + +PS  V  V   VPD    SS+       H P+ P P   S PK      L R  + +     P    SP  S P V ++  D+    
Subjt:  SPHESSHSVVTPSPSLSVSNVLPVVPDSPLSSSTSASHRSIHSPS-PLPAHDSDPKSPDHIPLARLLNRNPRTDVPE-STSPHPSPPPVNQNTSDSPPNI

Query:  DDSHPVPPPN----PTSVSSSNPLPSSTQPKNKAKNKQ-----ISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAI
        DD   VP       P + S+S    S+   K+ + ++      IST++G +K+P +V  VPIDG+SFH E   HKW YVV+RRIADE+ + D ++S  AI
Subjt:  DDSHPVPPPN----PTSVSSSNPLPSSTQPKNKAKNKQ-----ISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAI

Query:  MTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFLDIVLLAE-PPTFPTPDELASELAGGTVTHWPTTSSL
        + LI   +L  TVS +GPFYP+L+RE+ VN+PS F DPS+ +Y  +H+RG+ F++SP  LN +L + L A+   ++PTP+ LA EL GGT+  WP    L
Subjt:  MTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFLDIVLLAE-PPTFPTPDELASELAGGTVTHWPTTSSL

Query:  SAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKL
          A L++KY+ILH+I I +W+PS H+ T+S  L + ++L+GTG  V+   F  N L RH+D++AI +PIC PR    FLL Q  T L   +  G  P  +
Subjt:  SAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKL

Query:  HLSYRLFQGAHVPDIEHSL-RPPSSTNL---PHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVR
         L   LFQG+++PDI       P  T++    HP    T    L L   L N +L AL +ES SL+  I DLT+RR ++D+V+  +R
Subjt:  HLSYRLFQGAHVPDIEHSL-RPPSSTNL---PHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVR

TYK21447.1 uncharacterized protein E5676_scaffold609G001170 [Cucumis melo var. makuwa]7.0e-7435.73Show/hide
Query:  MVNTRRASYTPKVSVKKNSTPKDVGPSVKHLRTNKHEVRMRGTPKKATTTVHP--SPHESSHSVVTPSPSLSVSNVL---PVVPDSPLSSSTSASHRSIH
        MVNTR+ +Y  K S +               R   H +R+     K+T    P   P E +H+ +    + SV   +    V+ D+  +S+ S  H    
Subjt:  MVNTRRASYTPKVSVKKNSTPKDVGPSVKHLRTNKHEVRMRGTPKKATTTVHP--SPHESSHSVVTPSPSLSVSNVL---PVVPDSPLSSSTSASHRSIH

Query:  SPSPLPAHDSDPKSPDHIPLARLLN------------RNPRTDVPESTSPHPSPP-----PV--NQNTSDSPP--NIDDSHPVPP------------PNP
            L A DSD    D +PL +L +            ++P  D+   +  H +P      PV   +  S+  P  N+DD  PV P             +P
Subjt:  SPSPLPAHDSDPKSPDHIPLARLLN------------RNPRTDVPESTSPHPSPP-----PV--NQNTSDSPP--NIDDSHPVPP------------PNP

Query:  TSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLIPQAKLQSTVSNLG
         +   +  LP+ ++P   K +   + I+ ++  +++ L++  V IDG+SF+ E +V  WK VVQRRIAD+  +SD HHSC++IM LI +A L  T+SN+G
Subjt:  TSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLIPQAKLQSTVSNLG

Query:  PFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFLDIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAARLSVKYAILHKIGIH
        PFYP+L++E  VN P+ F DPSSPDY T+H+RG  F++SP  +N                          GT++ WP  + + A  LSVKY ILHKIGI 
Subjt:  PFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFLDIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAARLSVKYAILHKIGIH

Query:  SWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSYRLFQGAHVPDIEHS
        +W PS H+S+VS  L   ++ I     VD G+F  NQL RH+ S+ +KLPI LPRFF S LL  N  +L  ++AP   P  L LSYRLFQG++VPDI+H 
Subjt:  SWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSYRLFQGAHVPDIEHS

Query:  LRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS
        +       L    D      G  +   L +++L++LT+ESRSLST I  ++ERR  IDS++  ++   PSS
Subjt:  LRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS

TrEMBL top hitse value%identityAlignment
A0A5A7SZY3 Reverse transcriptase Ty1/copia-type domain-containing protein1.7e-7335.56Show/hide
Query:  MVNTRRASYTPKVSVKKNSTPKDVGPSVKHLRTNKHEVRMRGTPKKATTTVHP--------------SPHESSHSVVTPSPSLSVSNVLPVVPDSPLSSS
        MVNT + SY  + S       +DV P+V    +     R+RG   K+T    P              S HES      P       + +P++     +S 
Subjt:  MVNTRRASYTPKVSVKKNSTPKDVGPSVKHLRTNKHEVRMRGTPKKATTTVHP--------------SPHESSHSVVTPSPSLSVSNVLPVVPDSPLSSS

Query:  ----TSASHRSIHSPSPLPAHDSDPKSPDHIPLARLLNRNPRTDVPESTSPHPSPPPVNQNTSDSPP---------------------------NIDDSH
              A+ R IHS S  P           IP  R L R+P T    S S HP       +  D+ P                             DD  
Subjt:  ----TSASHRSIHSPSPLPAHDSDPKSPDHIPLARLLNRNPRTDVPESTSPHPSPPPVNQNTSDSPP---------------------------NIDDSH

Query:  P--VPPP--NPTSVSSSN--PLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI
        P  +PPP  +PT+ S+      P  +QP   K +   + I+T++G +K+ +++  VPIDG+SFHHE +V +WK+VVQRRIADE  +S  H SC++IM LI
Subjt:  P--VPPP--NPTSVSSSN--PLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLI

Query:  PQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFL-DIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAAR
         +A L+ T+SN+GPFYP+LIRE  VN+P  F +PSS  Y  IH+RG  F +S A +N FL + + +    + P  + LA  L+GGT++ WP  + +  A 
Subjt:  PQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFL-DIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAAR

Query:  LSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSY
        LS+KY  LHKIGI +W PS H+ ++S  L   ++ I     VD G+F  NQL RH+ S+ +K+PI LPRFF S LL  N  +L   +APG  P  +  SY
Subjt:  LSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSY

Query:  RLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS
        +LFQG+HV DI H +    S  +    D      G  +   LA +++++LT+ESR+L+  I+ L+ERR  +D+++  ++ L PS+
Subjt:  RLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS

A0A5A7U8Y1 Reverse transcriptase Ty1/copia-type domain-containing protein2.2e-7339.4Show/hide
Query:  RNPRTDVPESTSPHPSPP-----PV--NQNTSDSPP--NIDDSHPVPP------------PNPTSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVP
        ++P  D+   +  H +P      PV   +  S+  P  N+DD  PV P             +P +   +  LP+ ++P   K +   + I+ ++  +++ 
Subjt:  RNPRTDVPESTSPHPSPP-----PV--NQNTSDSPP--NIDDSHPVPP------------PNPTSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVP

Query:  LHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFS
        L++  V IDG+SF+ E +V  WK VVQRRIAD+  +SD HHSC++IM LI +A L  T+SN+GPFYP+L++E  VN P+ F DPSSPDY T+H+RG  F+
Subjt:  LHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFS

Query:  VSPASLNAFLDIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQ
        +SP  +N                          GT++ WP  + + A  LSVKY ILHKIGI +W PS H+S+VS  L   ++ I     VD G+F  NQ
Subjt:  VSPASLNAFLDIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQ

Query:  LKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSYRLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALT
        L RH+ S+ +KLPI LPRFF S LL  N  +L  ++AP   P  L LSYRLFQG++VPDI+H +       L    D      G  +   L +++L++LT
Subjt:  LKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSYRLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALT

Query:  SESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS
        +ESRSLST I  ++ERR  IDS++  ++   PSS
Subjt:  SESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS

A0A5A7VHK0 Uncharacterized protein5.2e-7538.83Show/hide
Query:  KATTTVHPSPHESSHSVVT--PSPSLSVSNVLPVVPDSPLSSSTSASHRSIHSPSPLPAHDSDPKSPDHIPLARLLNRNPRTDVPESTSPHPSPPPVNQN
        K  TT    P + +  V++     S S   V    PD   +SS         SP   P  D    S  H+    +      + VPE  +   S      N
Subjt:  KATTTVHPSPHESSHSVVT--PSPSLSVSNVLPVVPDSPLSSSTSASHRSIHSPSPLPAHDSDPKSPDHIPLARLLNRNPRTDVPESTSPHPSPPPVNQN

Query:  TSD----SPPNIDDSHPVPPP-NPTSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPI-DGLSFHHEAHVHKWKYVVQRRIADESEVSD
          D    +P + +D  PV    +P++   +  +P+  +P   K +   + I+T++G +K+PL++  V I DG+SFH E +V +WK+VVQRRIAD+  +SD
Subjt:  TSD----SPPNIDDSHPVPPP-NPTSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPI-DGLSFHHEAHVHKWKYVVQRRIADESEVSD

Query:  DHHSCLAIMTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFL-DIVLLAEPPTFPTPDELASELAGGTVT
         +HSC++IM LI +  L  T+ ++G FYP+LIRE  VN+P+ F DPSS DY  +H+RG  F++S   +N FL + V +   P+ P+ + LAS L GGT++
Subjt:  DHHSCLAIMTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFL-DIVLLAEPPTFPTPDELASELAGGTVT

Query:  HWPTTSSLSAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEA
         WP  + + A  LSVKYAILHKIGI SW PS H S+VS  L   ++ I     VD G F  NQL RH+ S+ +KLPI LPRFF   LL  N  +L  ++A
Subjt:  HWPTTSSLSAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEA

Query:  PGLSPSKLHLSYRLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS
        P   P  L LSYRLFQG HVPDI+H++       +    D      G  +   LA ++L++L  ESRSL+T I  ++ERR  IDS++  ++   PSS
Subjt:  PGLSPSKLHLSYRLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS

A0A5D3CWQ1 Gag-pol polyprotein3.4e-7439.43Show/hide
Query:  SPHESSHSVVTPSPSLSVSNVLPVVPDSPLSSSTSASHRSIHSPS-PLPAHDSDPKSPDHIPLARLLNRNPRTDVPE-STSPHPSPPPVNQNTSDSPPNI
        SP  SS +  + +PS  V  V   VPD    SS+       H P+ P P   S PK      L R  + +     P    SP  S P V ++  D+    
Subjt:  SPHESSHSVVTPSPSLSVSNVLPVVPDSPLSSSTSASHRSIHSPS-PLPAHDSDPKSPDHIPLARLLNRNPRTDVPE-STSPHPSPPPVNQNTSDSPPNI

Query:  DDSHPVPPPN----PTSVSSSNPLPSSTQPKNKAKNKQ-----ISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAI
        DD   VP       P + S+S    S+   K+ + ++      IST++G +K+P +V  VPIDG+SFH E   HKW YVV+RRIADE+ + D ++S  AI
Subjt:  DDSHPVPPPN----PTSVSSSNPLPSSTQPKNKAKNKQ-----ISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAI

Query:  MTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFLDIVLLAE-PPTFPTPDELASELAGGTVTHWPTTSSL
        + LI   +L  TVS +GPFYP+L+RE+ VN+PS F DPS+ +Y  +H+RG+ F++SP  LN +L + L A+   ++PTP+ LA EL GGT+  WP    L
Subjt:  MTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFLDIVLLAE-PPTFPTPDELASELAGGTVTHWPTTSSL

Query:  SAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKL
          A L++KY+ILH+I I +W+PS H+ T+S  L + ++L+GTG  V+   F  N L RH+D++AI +PIC PR    FLL Q  T L   +  G  P  +
Subjt:  SAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKL

Query:  HLSYRLFQGAHVPDIEHSL-RPPSSTNL---PHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVR
         L   LFQG+++PDI       P  T++    HP    T    L L   L N +L AL +ES SL+  I DLT+RR ++D+V+  +R
Subjt:  HLSYRLFQGAHVPDIEHSL-RPPSSTNL---PHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVR

A0A5D3DCR2 Reverse transcriptase Ty1/copia-type domain-containing protein3.4e-7435.73Show/hide
Query:  MVNTRRASYTPKVSVKKNSTPKDVGPSVKHLRTNKHEVRMRGTPKKATTTVHP--SPHESSHSVVTPSPSLSVSNVL---PVVPDSPLSSSTSASHRSIH
        MVNTR+ +Y  K S +               R   H +R+     K+T    P   P E +H+ +    + SV   +    V+ D+  +S+ S  H    
Subjt:  MVNTRRASYTPKVSVKKNSTPKDVGPSVKHLRTNKHEVRMRGTPKKATTTVHP--SPHESSHSVVTPSPSLSVSNVL---PVVPDSPLSSSTSASHRSIH

Query:  SPSPLPAHDSDPKSPDHIPLARLLN------------RNPRTDVPESTSPHPSPP-----PV--NQNTSDSPP--NIDDSHPVPP------------PNP
            L A DSD    D +PL +L +            ++P  D+   +  H +P      PV   +  S+  P  N+DD  PV P             +P
Subjt:  SPSPLPAHDSDPKSPDHIPLARLLN------------RNPRTDVPESTSPHPSPP-----PV--NQNTSDSPP--NIDDSHPVPP------------PNP

Query:  TSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLIPQAKLQSTVSNLG
         +   +  LP+ ++P   K +   + I+ ++  +++ L++  V IDG+SF+ E +V  WK VVQRRIAD+  +SD HHSC++IM LI +A L  T+SN+G
Subjt:  TSVSSSNPLPSSTQP---KNKAKNKQISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLIPQAKLQSTVSNLG

Query:  PFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFLDIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAARLSVKYAILHKIGIH
        PFYP+L++E  VN P+ F DPSSPDY T+H+RG  F++SP  +N                          GT++ WP  + + A  LSVKY ILHKIGI 
Subjt:  PFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFLDIVLLAEPPTFPTPDELASELAGGTVTHWPTTSSLSAARLSVKYAILHKIGIH

Query:  SWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSYRLFQGAHVPDIEHS
        +W PS H+S+VS  L   ++ I     VD G+F  NQL RH+ S+ +KLPI LPRFF S LL  N  +L  ++AP   P  L LSYRLFQG++VPDI+H 
Subjt:  SWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSKLHLSYRLFQGAHVPDIEHS

Query:  LRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS
        +       L    D      G  +   L +++L++LT+ESRSLST I  ++ERR  IDS++  ++   PSS
Subjt:  LRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAACACTAGACGTGCTTCCTACACTCCTAAAGTCTCTGTCAAAAAGAATTCAACACCTAAGGATGTTGGTCCCTCTGTCAAGCACTTGCGGACTAACAAACATGA
AGTTCGTATGCGTGGCACTCCTAAGAAAGCGACCACCACTGTGCATCCTTCTCCTCATGAGTCATCTCATTCTGTGGTAACTCCTTCTCCTTCCCTTTCTGTTTCTAATG
TTCTTCCTGTGGTTCCTGATTCTCCTTTATCTTCCTCTACCTCTGCATCTCATCGAAGTATTCATTCTCCGTCTCCGCTTCCTGCTCATGATTCTGATCCCAAATCTCCT
GACCACATCCCTCTGGCCCGTTTGCTTAATCGAAATCCACGAACTGATGTCCCTGAGTCCACATCTCCTCATCCGAGTCCTCCTCCGGTCAATCAAAATACTTCTGACTC
ACCTCCCAATATTGATGATTCTCATCCTGTGCCTCCGCCCAATCCTACTTCTGTTTCTTCTTCAAATCCTCTTCCTTCTTCTACTCAACCAAAAAATAAGGCCAAGAACA
AACAAATTTCTACACAATCTGGTTGGCGGAAGGTGCCTCTGCATGTTAATCCTGTCCCTATTGATGGACTTTCCTTCCATCATGAGGCGCATGTCCACAAGTGGAAATAT
GTGGTCCAACGTCGTATTGCTGATGAGTCTGAAGTCTCAGATGATCACCATTCGTGTCTTGCTATCATGACTCTCATCCCTCAAGCCAAACTTCAGTCTACAGTTTCCAA
TCTAGGCCCGTTCTATCCCAAATTAATTCGGGAAATGTTTGTTAACATTCCTTCTTCTTTTGAAGATCCTAGTAGCCCTGACTATCATACAATTCATGTGAGAGGAATGG
CTTTCTCTGTTTCCCCTGCTTCTCTAAATGCCTTTCTTGATATTGTTCTTCTTGCAGAACCTCCAACCTTTCCTACTCCTGATGAACTTGCTTCTGAGTTAGCGGGAGGT
ACTGTCACTCACTGGCCAACTACTAGTTCTCTTTCAGCAGCTAGGCTAAGTGTTAAGTATGCCATCCTTCACAAGATTGGAATCCACAGTTGGCTTCCTTCTCTTCATTC
TTCCACTGTGTCTCCCATTCTGGCTAACTTAATCTTTTTAATTGGGACTGGTAAACCGGTTGACTTTGGTTCCTTTGCTGTGAATCAACTAAAGCGTCATATAGATTCGT
ATGCCATTAAACTCCCTATATGTCTGCCCCGTTTCTTCTGCAGTTTCCTTCTAACCCAGAATCATACTATACTTCATCCCAATGAGGCTCCTGGTCTCTCTCCTTCCAAG
CTTCATTTAAGCTATCGTCTTTTTCAAGGAGCTCATGTACCTGACATTGAGCATTCTCTTCGTCCCCCTTCTTCCACTAATCTTCCTCACCCTGATGACTTAAGAACTCC
TGACGGTGGCCTGTTGCTTCCTCCTCCTCTTGCCAATCAAGTCTTGCATGCCTTAACCTCTGAATCAAGAAGTCTCAGTACCATCATTCATGATCTTACAGAAAGACGAA
AGCTTATTGATTCTGTTGTCTCCTCTGTTCGATTGCTGATTCCTTCCTCGGAGGAAGTTCTTGTTGACCAATCTGATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAACACTAGACGTGCTTCCTACACTCCTAAAGTCTCTGTCAAAAAGAATTCAACACCTAAGGATGTTGGTCCCTCTGTCAAGCACTTGCGGACTAACAAACATGA
AGTTCGTATGCGTGGCACTCCTAAGAAAGCGACCACCACTGTGCATCCTTCTCCTCATGAGTCATCTCATTCTGTGGTAACTCCTTCTCCTTCCCTTTCTGTTTCTAATG
TTCTTCCTGTGGTTCCTGATTCTCCTTTATCTTCCTCTACCTCTGCATCTCATCGAAGTATTCATTCTCCGTCTCCGCTTCCTGCTCATGATTCTGATCCCAAATCTCCT
GACCACATCCCTCTGGCCCGTTTGCTTAATCGAAATCCACGAACTGATGTCCCTGAGTCCACATCTCCTCATCCGAGTCCTCCTCCGGTCAATCAAAATACTTCTGACTC
ACCTCCCAATATTGATGATTCTCATCCTGTGCCTCCGCCCAATCCTACTTCTGTTTCTTCTTCAAATCCTCTTCCTTCTTCTACTCAACCAAAAAATAAGGCCAAGAACA
AACAAATTTCTACACAATCTGGTTGGCGGAAGGTGCCTCTGCATGTTAATCCTGTCCCTATTGATGGACTTTCCTTCCATCATGAGGCGCATGTCCACAAGTGGAAATAT
GTGGTCCAACGTCGTATTGCTGATGAGTCTGAAGTCTCAGATGATCACCATTCGTGTCTTGCTATCATGACTCTCATCCCTCAAGCCAAACTTCAGTCTACAGTTTCCAA
TCTAGGCCCGTTCTATCCCAAATTAATTCGGGAAATGTTTGTTAACATTCCTTCTTCTTTTGAAGATCCTAGTAGCCCTGACTATCATACAATTCATGTGAGAGGAATGG
CTTTCTCTGTTTCCCCTGCTTCTCTAAATGCCTTTCTTGATATTGTTCTTCTTGCAGAACCTCCAACCTTTCCTACTCCTGATGAACTTGCTTCTGAGTTAGCGGGAGGT
ACTGTCACTCACTGGCCAACTACTAGTTCTCTTTCAGCAGCTAGGCTAAGTGTTAAGTATGCCATCCTTCACAAGATTGGAATCCACAGTTGGCTTCCTTCTCTTCATTC
TTCCACTGTGTCTCCCATTCTGGCTAACTTAATCTTTTTAATTGGGACTGGTAAACCGGTTGACTTTGGTTCCTTTGCTGTGAATCAACTAAAGCGTCATATAGATTCGT
ATGCCATTAAACTCCCTATATGTCTGCCCCGTTTCTTCTGCAGTTTCCTTCTAACCCAGAATCATACTATACTTCATCCCAATGAGGCTCCTGGTCTCTCTCCTTCCAAG
CTTCATTTAAGCTATCGTCTTTTTCAAGGAGCTCATGTACCTGACATTGAGCATTCTCTTCGTCCCCCTTCTTCCACTAATCTTCCTCACCCTGATGACTTAAGAACTCC
TGACGGTGGCCTGTTGCTTCCTCCTCCTCTTGCCAATCAAGTCTTGCATGCCTTAACCTCTGAATCAAGAAGTCTCAGTACCATCATTCATGATCTTACAGAAAGACGAA
AGCTTATTGATTCTGTTGTCTCCTCTGTTCGATTGCTGATTCCTTCCTCGGAGGAAGTTCTTGTTGACCAATCTGATCTTTAA
Protein sequenceShow/hide protein sequence
MVNTRRASYTPKVSVKKNSTPKDVGPSVKHLRTNKHEVRMRGTPKKATTTVHPSPHESSHSVVTPSPSLSVSNVLPVVPDSPLSSSTSASHRSIHSPSPLPAHDSDPKSP
DHIPLARLLNRNPRTDVPESTSPHPSPPPVNQNTSDSPPNIDDSHPVPPPNPTSVSSSNPLPSSTQPKNKAKNKQISTQSGWRKVPLHVNPVPIDGLSFHHEAHVHKWKY
VVQRRIADESEVSDDHHSCLAIMTLIPQAKLQSTVSNLGPFYPKLIREMFVNIPSSFEDPSSPDYHTIHVRGMAFSVSPASLNAFLDIVLLAEPPTFPTPDELASELAGG
TVTHWPTTSSLSAARLSVKYAILHKIGIHSWLPSLHSSTVSPILANLIFLIGTGKPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCSFLLTQNHTILHPNEAPGLSPSK
LHLSYRLFQGAHVPDIEHSLRPPSSTNLPHPDDLRTPDGGLLLPPPLANQVLHALTSESRSLSTIIHDLTERRKLIDSVVSSVRLLIPSSEEVLVDQSDL