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PI0013508 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013508
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:22116547..22117946
RNA-Seq ExpressionPI0013508
SyntenyPI0013508
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061315.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-0734.26Show/hide
Query:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--
        ++GHQ DKCPE++++VN +   +RYDPH N  YN  WR +P ++WGN  Q     PS  +     L  + + L    + + Q+++   +Q  TTT+ +  
Subjt:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--

Query:  -GPLTLDP
         G L+  P
Subjt:  -GPLTLDP

TYK14267.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-0734.26Show/hide
Query:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--
        ++GHQ DKCPE++++VN +   +RYDPH N  YN  WR +P ++WGN  Q     PS  +     L  + + L    + + Q+++   +Q  TTT+ +  
Subjt:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--

Query:  -GPLTLDP
         G L+  P
Subjt:  -GPLTLDP

XP_008465471.1 PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo]3.0e-0734.26Show/hide
Query:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--
        ++GHQ DKCPE++++VN +   +RYDPH N  YN  WR +P ++WGN  Q     PS  +     L  + + L    + + Q+++   +Q  TTT+ +  
Subjt:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--

Query:  -GPLTLDP
         G L+  P
Subjt:  -GPLTLDP

XP_021850890.1 uncharacterized protein LOC110790418 [Spinacia oleracea]1.3e-0750.75Show/hide
Query:  HQTDKCPELMKE-VNAIGGF---KRYDPHSNNMYNLEWRKHPKMKWGNQAQF---DQRPSYGAPPPP
        H TDKCPEL  E VNAIGG+   ++YDP+S   YN  W+ HP +++GN+ QF   +Q   YG P PP
Subjt:  HQTDKCPELMKE-VNAIGGF---KRYDPHSNNMYNLEWRKHPKMKWGNQAQF---DQRPSYGAPPPP

XP_028948149.1 uncharacterized protein LOC114820951 [Malus domestica]3.9e-0746.58Show/hide
Query:  MIGHQTDKCPELM-----KEVNAIGGF-----KRYDPHSNNMYNLEWRKHPKMKWGNQAQFDQR--PSYGAPP
        M+GH TD CP LM     ++ NA+GGF     ++YDP+SNN YN  WR HP +KW NQ    Q    +Y  PP
Subjt:  MIGHQTDKCPELM-----KEVNAIGGF-----KRYDPHSNNMYNLEWRKHPKMKWGNQAQFDQR--PSYGAPP

TrEMBL top hitse value%identityAlignment
A0A1S3CQF6 uncharacterized protein LOC1035030781.4e-0734.26Show/hide
Query:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--
        ++GHQ DKCPE++++VN +   +RYDPH N  YN  WR +P ++WGN  Q     PS  +     L  + + L    + + Q+++   +Q  TTT+ +  
Subjt:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--

Query:  -GPLTLDP
         G L+  P
Subjt:  -GPLTLDP

A0A540MJX8 Uncharacterized protein1.9e-0746.58Show/hide
Query:  MIGHQTDKCPELM-----KEVNAIGGF-----KRYDPHSNNMYNLEWRKHPKMKWGNQAQFDQR--PSYGAPP
        M+GH TD CP LM     ++ NA+GGF     ++YDP+SNN YN  WR HP +KW NQ    Q    +Y  PP
Subjt:  MIGHQTDKCPELM-----KEVNAIGGF-----KRYDPHSNNMYNLEWRKHPKMKWGNQAQFDQR--PSYGAPP

A0A5A7V668 Retrotransposon gag protein1.4e-0734.26Show/hide
Query:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--
        ++GHQ DKCPE++++VN +   +RYDPH N  YN  WR +P ++WGN  Q     PS  +     L  + + L    + + Q+++   +Q  TTT+ +  
Subjt:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--

Query:  -GPLTLDP
         G L+  P
Subjt:  -GPLTLDP

A0A5D3CQR9 Retrotransposon gag protein1.4e-0734.26Show/hide
Query:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--
        ++GHQ DKCPE++++VN +   +RYDPH N  YN  WR +P ++WGN  Q     PS  +     L  + + L    + + Q+++   +Q  TTT+ +  
Subjt:  MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQ-FDQRPSYGAPPPPLLLKVKRRLGGKVVKW-QKVRDASSQRNTTTTHL--

Query:  -GPLTLDP
         G L+  P
Subjt:  -GPLTLDP

A0A5N5HXX9 Uncharacterized protein1.9e-0746.58Show/hide
Query:  MIGHQTDKCPELM-----KEVNAIGGF-----KRYDPHSNNMYNLEWRKHPKMKWGNQAQFDQR--PSYGAPP
        M+GH TD CP LM     ++ NA+GGF     ++YDP+SNN YN  WR HP +KW NQ    Q    +Y  PP
Subjt:  MIGHQTDKCPELM-----KEVNAIGGF-----KRYDPHSNNMYNLEWRKHPKMKWGNQAQFDQR--PSYGAPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGACACCAAACCGATAAATGTCCCGAGCTTATGAAGGAAGTTAATGCCATTGGAGGATTCAAAAGATATGATCCCCATAGTAACAACATGTATAACTTAGAATG
GAGGAAGCATCCAAAAATGAAGTGGGGAAACCAAGCTCAATTTGACCAAAGACCCTCCTATGGCGCTCCTCCTCCTCCACTTCTTCTTAAGGTCAAACGAAGATTAGGGG
GCAAAGTCGTCAAATGGCAAAAGGTTCGAGACGCCTCATCTCAGAGAAATACTACCACAACCCATCTCGGACCACTTACTCTTGATCCGAGAGACGACGTGAAGTCAACT
GATACCGTTCTCCTCTCAACAATACCTGCTGACCCTGACCTCCAACCCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGACACCAAACCGATAAATGTCCCGAGCTTATGAAGGAAGTTAATGCCATTGGAGGATTCAAAAGATATGATCCCCATAGTAACAACATGTATAACTTAGAATG
GAGGAAGCATCCAAAAATGAAGTGGGGAAACCAAGCTCAATTTGACCAAAGACCCTCCTATGGCGCTCCTCCTCCTCCACTTCTTCTTAAGGTCAAACGAAGATTAGGGG
GCAAAGTCGTCAAATGGCAAAAGGTTCGAGACGCCTCATCTCAGAGAAATACTACCACAACCCATCTCGGACCACTTACTCTTGATCCGAGAGACGACGTGAAGTCAACT
GATACCGTTCTCCTCTCAACAATACCTGCTGACCCTGACCTCCAACCCTTTTAA
Protein sequenceShow/hide protein sequence
MIGHQTDKCPELMKEVNAIGGFKRYDPHSNNMYNLEWRKHPKMKWGNQAQFDQRPSYGAPPPPLLLKVKRRLGGKVVKWQKVRDASSQRNTTTTHLGPLTLDPRDDVKST
DTVLLSTIPADPDLQPF