CuGenDBv2

Gene ID	PI0013512
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	recQ-mediated genome instability protein 2
Genome location	chr12:19499180..19502969
RNA-Seq Expression	PI0013512
Synteny	PI0013512
Gene Ontology terms	GO:0033045 - regulation of sister chromatid segregation (biological process) GO:0043007 - maintenance of rDNA (biological process) GO:2000042 - negative regulation of double-strand break repair via homologous recombination (biological process) GO:0005829 - cytosol (cellular component) GO:0016607 - nuclear speck (cellular component)
InterPro domains	IPR032245 - RecQ-mediated genome instability protein 2

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139456.1 recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativus]

3.1e-52

69.33

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF
        MDY+L ALKLLCRQLKDAR TPS+  A LGGILFQRAWLQGILVSVDKENGKL LDD TGTVELSLSRDFLLRPW+L                       
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF

Query:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF
              GMYVMVVGAF+F TN  P I VHKI+DLSKSP+REAMWYLEV+EAYK+FYEPLVE+F
Subjt:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF

XP_008462275.1 PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo]

2.5e-54

71.78

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF
        MDY+LAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDKENGKL LDDGTGTVELSL R+FLLRPW+L                       
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF

Query:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF
              GMYVMVVGAF+F TN PP I+VHKIVDLSKSP+REAMWYLEV+EAYKMFYEPLVEEF
Subjt:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF

XP_022970350.1 uncharacterized protein LOC111469342 [Cucurbita maxima]

2.0e-51

69.51

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF
        MDY LAALKLLCRQL DAR+ PSN AATLGGILFQRAWLQGILV VD++NGKL LDDGTGTVELSLS DF  RPW+L                       
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF

Query:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS
              GMYVMVVGA+V  TN P IIAVHKIVDLSK P REAMWYLEV+EAYKMFYEPLVEEFS
Subjt:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS

XP_031736186.1 recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativus]

1.0e-63

79.14

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF
        MDY+L ALKLLCRQLKDAR TPS+  A LGGILFQRAWLQGILVSVDKENGKL LDD TGTVELSLSRDFLLRPW+LGI        F  LHFEL SL F
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF

Query:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF
        F CFCSGMYVMVVGAF+F TN  P I VHKI+DLSKSP+REAMWYLEV+EAYK+FYEPLVE+F
Subjt:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF

XP_038894076.1 uncharacterized protein LOC120082820 [Benincasa hispida]

6.0e-56

72.56

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF
        MDY+LAALKLLCRQLKDAR++P+N AATLGGILFQRAWLQG LVSVDKEN KL LDDGTGTVELSLSRDF LRPW L                       
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF

Query:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS
              GMYVMVVGAFVF TN PP+IAVHKIVDLSK PDREAMWYLEV+EAYKMFYEPL+EEFS
Subjt:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LVL5 Uncharacterized protein

1.5e-52

69.33

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF
        MDY+L ALKLLCRQLKDAR TPS+  A LGGILFQRAWLQGILVSVDKENGKL LDD TGTVELSLSRDFLLRPW+L                       
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF

Query:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF
              GMYVMVVGAF+F TN  P I VHKI+DLSKSP+REAMWYLEV+EAYK+FYEPLVE+F
Subjt:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF

A0A1S3CGI5 recQ-mediated genome instability protein 2

1.2e-54

71.78

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF
        MDY+LAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDKENGKL LDDGTGTVELSL R+FLLRPW+L                       
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF

Query:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF
              GMYVMVVGAF+F TN PP I+VHKIVDLSKSP+REAMWYLEV+EAYKMFYEPLVEEF
Subjt:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF

A0A5A7UD07 RecQ-mediated genome instability protein 2

1.2e-54

71.78

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF
        MDY+LAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDKENGKL LDDGTGTVELSL R+FLLRPW+L                       
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF

Query:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF
              GMYVMVVGAF+F TN PP I+VHKIVDLSKSP+REAMWYLEV+EAYKMFYEPLVEEF
Subjt:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEF

A0A6J1HLJ4 uncharacterized protein LOC111464675 isoform X1

3.6e-51

68.9

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF
        MDY+LAALKLLCRQL DAR+ PSN AATLGGILFQRAWLQGILV VD++NGKL LDDGTGTVELSLS DF  RPW+L                       
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF

Query:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS
              GMYVMVVGA+V  TN P IIAVHKIVDLS  P REAMWYLEV+EAYKMFYEPLVEEFS
Subjt:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS

A0A6J1I0C8 uncharacterized protein LOC111469342

9.6e-52

69.51

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF
        MDY LAALKLLCRQL DAR+ PSN AATLGGILFQRAWLQGILV VD++NGKL LDDGTGTVELSLS DF  RPW+L                       
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPF

Query:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS
              GMYVMVVGA+V  TN P IIAVHKIVDLSK P REAMWYLEV+EAYKMFYEPLVEEFS
Subjt:  FVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G08390.1 unknown protein

6.8e-42

53.01

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Query:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGK--LTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSL
        MDY+LAA+K+LC QL+DA+ TPS  AA+LGG+LFQRAWLQG+LV      G   L LDDGTG +EL L+ DF LR W                       
Subjt:  MDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGK--LTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSL

Query:  PFFVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS
               SGMYVMVVG +   T   P++ VHK+VDLS SPDREAMWYLEV++AY++FYEPL++EFS
Subjt:  PFFVCFCSGMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS

Sequences

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CDS sequence

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ATGAAGCGGGATATGGACTACACCTTAGCAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCCGAACCCCGTCCAACACCGCCGCCACTCTCGGCGGAATTCT
CTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAAGAAAATGGTAAATTGACTCTCGATGATGGCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGATT
TCCTTCTCCGCCCTTGGACCCTCGGTATCTGCCTACTACTTCCCCATTGTCCTTTTTGCTGCCTGCATTTTGAGTTGGTTTCTCTCCCTTTCTTTGTTTGCTTTTGTTCA
GGGATGTATGTGATGGTTGTTGGCGCTTTTGTCTTCCTGACGAATGGACCGCCCATTATTGCGGTCCACAAGATTGTTGATCTTTCAAAGTCTCCCGATCGAGAGGCAAT
GTGGTACCTTGAAGTCATTGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGTAA

mRNA sequence

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CTTTGACCAAAATTAGTGGAAAAATCCAACATTTTGTTGGATAATCCCACTAACTCTTAGTGGTCTATGTGGAGGCTCATGGTGATGACACCAAGCCCACTAAGAGAAAG
TGCAATGTTGAATAATTCTACTAATGGTTAGTGGAAAGTGAGGTGTTGGGTTTTGGTGAACTAATTACATATAATTAGGTTATCTAAAGAAAGGATATTCAAATGGTTGA
AAACTTTTGCTCCTTTTATTAGTTTGTTTTCTAAAATAATTTCACCAAAGTAATTACTCTCCCAACTCTCAACCCTAAGTCCATCTTTCTAATTGCATCTCTCTCTCAAT
TCCTTCATGCATCGGATCTCACAACCTGATTCTAAGTCCATAGAGTAGTGGGTCAACACTAGTGGTGGTCCAGTCCAAGATCATGAGAAAATTACGAGAATTCGGGAGCT
ATGAAGCGGGATATGGACTACACCTTAGCAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCCGAACCCCGTCCAACACCGCCGCCACTCTCGGCGGAATTCT
CTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAAGAAAATGGTAAATTGACTCTCGATGATGGCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGATT
TCCTTCTCCGCCCTTGGACCCTCGGTATCTGCCTACTACTTCCCCATTGTCCTTTTTGCTGCCTGCATTTTGAGTTGGTTTCTCTCCCTTTCTTTGTTTGCTTTTGTTCA
GGGATGTATGTGATGGTTGTTGGCGCTTTTGTCTTCCTGACGAATGGACCGCCCATTATTGCGGTCCACAAGATTGTTGATCTTTCAAAGTCTCCCGATCGAGAGGCAAT
GTGGTACCTTGAAGTCATTGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGTAACTTGTTTTCTCGACTCAAAAGTTGGTGATTATTTTATTTTCAT
ATTATTTCAAAAATGCATCAATTTCTTGTAATCCTACAAAAGGGTTTTTTTTCCTCCTCTTATTACATAGTTATTGAAATTCTCACCTGATTTGTTATGATGGTCTTTCG
ATCTCGGAAGATCACAACTCTAAAGTAGAGAATCCGAGTTAAATCCTTTCTCTTGGTAGGCATAATTAAGAAAACACAAGTAGATAAGGATTAGCAGATTAGGAAAGCCA
ATCTTCTTGCTTTGCGTATCCGATGATGTCAAAAGAGAATTTTGTGATATACATACCATAGTAATTGGGCTTAATTCTTAGTTTAATCTGTTAGTTTCTTTTCTGTATTT
TTAAGTACTTAGTCAGTAAATACCCTATTAATGGAGGTTTTTTAGCATGTAATTGATAACTTTTTGATGTAGAACTATATACCTTCAATGGGAGGAGATGGATATGGAGA
AATCCTTGGATTGGGCCAAAAATGTCGAAAGTTTTGGTGGGAAAATTTGGTACAAATGCGCATATCACAAAACTTGTAAGGATTTTCAGATTGTAGATGGTATTTCGTTT
AAAGGATGTTTGCATTACCACATACTTCTCTCAGGGAGCCTATAATTCATGATCTTCATGTGGGGGCTTGCAATGCATTTTGGTAAAGATAAAACCATAGATGTTGTATT
GTCGATATCGAACTCTTCTATTTACAAATATATCAACATATGGACA

Protein sequence

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MKRDMDYTLAALKLLCRQLKDARRTPSNTAATLGGILFQRAWLQGILVSVDKENGKLTLDDGTGTVELSLSRDFLLRPWTLGICLLLPHCPFCCLHFELVSLPFFVCFCS
GMYVMVVGAFVFLTNGPPIIAVHKIVDLSKSPDREAMWYLEVIEAYKMFYEPLVEEFS

PI0013512 (gene) of Melon (PI 482460) v1 genome