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PI0013517 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013517
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:8829944..8830416
RNA-Seq ExpressionPI0013517
SyntenyPI0013517
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050358.1 uncharacterized protein E6C27_scaffold88G00900 [Cucumis melo var. makuwa]5.0e-5171.14Show/hide
Query:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------
        ++S DLN PFRFEG HF+RWK+K LFFLTL+KVA TCTTEK +V + DPTEEQ+KNL TW ETDFI KNLILNGLTDELYDYY+TM+TAK          
Subjt:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------

Query:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
          EE GSKKYAV+ YLRYQ+T++R VEAQSHEIQKIAH+IISEGM LD+
Subjt:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE

KAA0050409.1 hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]6.1e-5775.84Show/hide
Query:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------
        ++SSDLNRPFRFEG HF+RWK+K LFFLTL+KVA  CTTEKP+V + DPT+EQ+KNLTTW ETDFICKNLILNGLTDELYDYY+TM+TAK          
Subjt:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------

Query:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
          EEAGSKKYAVSRYLRYQMTD+R VEAQSHEIQKIAH+II+EGM LD+
Subjt:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE

KAA0060458.1 uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa]7.9e-5772.61Show/hide
Query:  MVVSLPNDVLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK--
        M   + +D++SSDLNR FRFEG HF+RWK+K LFFLTL+KVA  CTTEKP+V + DPTEEQ+KNL TW ETDFICKNLILNGLTDELYDYY+TM+TAK  
Subjt:  MVVSLPNDVLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK--

Query:  ----------EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
                  EEAGSKKYAVSRYLRYQMTD++ VEAQSHEIQKIAH+IISEGM LD+
Subjt:  ----------EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE

KAA0065374.1 uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa]7.4e-5570.7Show/hide
Query:  MVVSLPNDVLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAKE-
        MV  + +D++SSDLNRPFRFEG HF+RWK+K LFFLTL+KVA  CTTEK +V + DP EEQ+KNL TW ETDFICKNLILNGLTDELYDYY+TM+T KE 
Subjt:  MVVSLPNDVLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAKE-

Query:  -----------EAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
                   EA SKKYAVSRYLRYQMTD++ VE QSHEIQKIAH+IISEGM LD+
Subjt:  -----------EAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE

TYJ98000.1 hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]3.0e-5675.17Show/hide
Query:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------
        ++SSDLNRPFRFEG HF+RWK+K LFFLTL+KVA  CT EKP+V + DPT+EQ+KNLTTW ETDFICKNLILNGLTDELYDYY+TM+TAK          
Subjt:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------

Query:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
          EEAGSKKYAVSRYLRYQMTD+R VEAQSHEIQKIAH+II+EGM LD+
Subjt:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE

TrEMBL top hitse value%identityAlignment
A0A5A7UA92 Uncharacterized protein2.9e-5775.84Show/hide
Query:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------
        ++SSDLNRPFRFEG HF+RWK+K LFFLTL+KVA  CTTEKP+V + DPT+EQ+KNLTTW ETDFICKNLILNGLTDELYDYY+TM+TAK          
Subjt:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------

Query:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
          EEAGSKKYAVSRYLRYQMTD+R VEAQSHEIQKIAH+II+EGM LD+
Subjt:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE

A0A5A7UYY4 Uncharacterized protein3.8e-5772.61Show/hide
Query:  MVVSLPNDVLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK--
        M   + +D++SSDLNR FRFEG HF+RWK+K LFFLTL+KVA  CTTEKP+V + DPTEEQ+KNL TW ETDFICKNLILNGLTDELYDYY+TM+TAK  
Subjt:  MVVSLPNDVLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK--

Query:  ----------EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
                  EEAGSKKYAVSRYLRYQMTD++ VEAQSHEIQKIAH+IISEGM LD+
Subjt:  ----------EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE

A0A5D3BDS3 Uncharacterized protein1.5e-5675.17Show/hide
Query:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------
        ++SSDLNRPFRFEG HF+RWK+K LFFLTL+KVA  CT EKP+V + DPT+EQ+KNLTTW ETDFICKNLILNGLTDELYDYY+TM+TAK          
Subjt:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------

Query:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
          EEAGSKKYAVSRYLRYQMTD+R VEAQSHEIQKIAH+II+EGM LD+
Subjt:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE

A0A5D3BV12 Uncharacterized protein2.4e-5171.14Show/hide
Query:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------
        ++S DLN PFRFEG HF+RWK+K LFFLTL+KVA TCTTEK +V + DPTEEQ+KNL TW ETDFI KNLILNGLTDELYDYY+TM+TAK          
Subjt:  VLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAK----------

Query:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
          EE GSKKYAV+ YLRYQ+T++R VEAQSHEIQKIAH+IISEGM LD+
Subjt:  --EEAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE

A0A5D3DC59 Reverse transcriptase Ty1/copia-type domain-containing protein3.6e-5570.7Show/hide
Query:  MVVSLPNDVLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAKE-
        MV  + +D++SSDLNRPFRFEG HF+RWK+K LFFLTL+KVA  CTTEK +V + DP EEQ+KNL TW ETDFICKNLILNGLTDELYDYY+TM+T KE 
Subjt:  MVVSLPNDVLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAKE-

Query:  -----------EAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
                   EA SKKYAVSRYLRYQMTD++ VE QSHEIQKIAH+IISEGM LD+
Subjt:  -----------EAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G00980.1 zinc knuckle (CCHC-type) family protein7.0e-1129.25Show/hide
Query:  RFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLT-------TWIETDFICKNLILNGLTDELYDYYN-TMSTAKE-----------
        RF+G  +  W  +   FL   K+    +   P +  S   E   + +T        W+  D++C   ++N L+D LY  Y+     AKE           
Subjt:  RFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLT-------TWIETDFICKNLILNGLTDELYDYYN-TMSTAKE-----------

Query:  -EAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE
         E+ SK+  V +Y+ ++M +ERP+  Q     KIA  I+S GM LDE
Subjt:  -EAGSKKYAVSRYLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGTTTCACTACCGAACGATGTACTGTCTTCTGATCTCAACCGACCATTTCGTTTTGAAGGAGTACACTTCAGGCGCTGGAAGAAAAAAAGGCTATTCTTCCTGAC
ATTGAGAAAAGTAGCTGCAACGTGTACCACAGAAAAACCAGAAGTCCCAAAATCTGATCCAACGGAGGAGCAAATTAAGAATCTTACTACATGGATAGAGACAGATTTTA
TATGTAAGAACTTAATTCTTAATGGACTTACTGATGAGTTGTATGACTATTATAACACTATGTCAACTGCAAAGGAAGAGGCCGGATCCAAGAAGTACGCGGTAAGCAGA
TACTTGCGATACCAAATGACTGATGAAAGACCCGTGGAGGCTCAATCACATGAGATACAAAAAATTGCGCATGACATAATCAGCGAAGGTATGTCACTCGATGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGTTTCACTACCGAACGATGTACTGTCTTCTGATCTCAACCGACCATTTCGTTTTGAAGGAGTACACTTCAGGCGCTGGAAGAAAAAAAGGCTATTCTTCCTGAC
ATTGAGAAAAGTAGCTGCAACGTGTACCACAGAAAAACCAGAAGTCCCAAAATCTGATCCAACGGAGGAGCAAATTAAGAATCTTACTACATGGATAGAGACAGATTTTA
TATGTAAGAACTTAATTCTTAATGGACTTACTGATGAGTTGTATGACTATTATAACACTATGTCAACTGCAAAGGAAGAGGCCGGATCCAAGAAGTACGCGGTAAGCAGA
TACTTGCGATACCAAATGACTGATGAAAGACCCGTGGAGGCTCAATCACATGAGATACAAAAAATTGCGCATGACATAATCAGCGAAGGTATGTCACTCGATGAATAA
Protein sequenceShow/hide protein sequence
MVVSLPNDVLSSDLNRPFRFEGVHFRRWKKKRLFFLTLRKVAATCTTEKPEVPKSDPTEEQIKNLTTWIETDFICKNLILNGLTDELYDYYNTMSTAKEEAGSKKYAVSR
YLRYQMTDERPVEAQSHEIQKIAHDIISEGMSLDE