CuGenDBv2

Gene ID	PI0013523
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr04:25458109..25459371
RNA-Seq Expression	PI0013523
Synteny	PI0013523
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.8e-40

74.17

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Query:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE
        MTS+GNTSKALSDIGKRPNTR+ SRE QSSEDMPPF+VAKNIWE++SKPPKGGI+IKEN  IDEH S SERS+EE+P PNIMS+MVTD+DTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE

Query:  KKKKLLRSSVVGSSVSLPLL
        KK  +L   V      + LL
Subjt:  KKKKLLRSSVVGSSVSLPLL

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

2.1e-40

74.17

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Query:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE
        MTS+GNTSKALSDIGKRPNTR+ SRE QSSEDMPPF+VAKNIWE++SKPPKGGI+IKEN  +DEH S SERS+EE+P PNIMSVMVTD+DTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE

Query:  KKKKLLRSSVVGSSVSLPLL
        KK  +L  +V      + LL
Subjt:  KKKKLLRSSVVGSSVSLPLL

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

9.5e-41

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Query:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE
        MTS+GNTSKALSDIGKRPNTR+ SRE QSSEDMPPFEV KNIWE++SKPPKGGI+IKEN  IDEH S SERS+EE+P PNIMSVMVTD+DTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE

Query:  KKKKLLRSSVVGSSVSLPLL
        KK  +L  +V      + LL
Subjt:  KKKKLLRSSVVGSSVSLPLL

KAA0053463.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.6e-40

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Query:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE
        MTS+GNTSKALSDIGKRPNTR+ SRE QSSEDMP FEVAKNIWE++SKPPKGGI+IKEN  IDEH S SERS+EE+P PNIMSVMVTD+DTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE

Query:  KKKKLLRSSVVGSSVSLPLL
        KK  +L  +V      + LL
Subjt:  KKKKLLRSSVVGSSVSLPLL

TYK02263.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.6e-40

73.33

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Query:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE
        MTS+GNTSKALSDIGKRPNTR+ SRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKEN  IDEH S SERS+EE+P PNIMS+MVTD+DTSEDRM +LE
Subjt:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE

Query:  KKKKLLRSSVVGSSVSLPLL
        KK  +L  +V      + LL
Subjt:  KKKKLLRSSVVGSSVSLPLL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKR0 Ty3-gypsy retrotransposon protein

1.3e-40

74.17

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Query:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE
        MTS+GNTSKALSDIGKRPNTR+ SRE QSSEDMPPF+VAKNIWE++SKPPKGGI+IKEN  IDEH S SERS+EE+P PNIMS+MVTD+DTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE

Query:  KKKKLLRSSVVGSSVSLPLL
        KK  +L   V      + LL
Subjt:  KKKKLLRSSVVGSSVSLPLL

A0A5A7TZU9 Ribonuclease H

1.0e-40

74.17

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Query:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE
        MTS+GNTSKALSDIGKRPNTR+ SRE QSSEDMPPF+VAKNIWE++SKPPKGGI+IKEN  +DEH S SERS+EE+P PNIMSVMVTD+DTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE

Query:  KKKKLLRSSVVGSSVSLPLL
        KK  +L  +V      + LL
Subjt:  KKKKLLRSSVVGSSVSLPLL

A0A5A7U5H1 Ty3-gypsy retrotransposon protein

4.6e-41

Show/hide

Query:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE
        MTS+GNTSKALSDIGKRPNTR+ SRE QSSEDMPPFEV KNIWE++SKPPKGGI+IKEN  IDEH S SERS+EE+P PNIMSVMVTD+DTSEDRMAELE
Subjt:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE

Query:  KKKKLLRSSVVGSSVSLPLL
        KK  +L  +V      + LL
Subjt:  KKKKLLRSSVVGSSVSLPLL

A0A5A7UZD5 Ty3-gypsy retrotransposon protein

1.7e-40

73.33

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Query:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE
        MTS+GNTSKALSDIGKRPNTR+ SRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKEN  IDEH S SERS+EE+P PNIMS+MVTD+DTSEDRM +LE
Subjt:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE

Query:  KKKKLLRSSVVGSSVSLPLL
        KK  +L  +V      + LL
Subjt:  KKKKLLRSSVVGSSVSLPLL

A0A5D3BRH6 Ty3-gypsy retrotransposon protein

1.7e-40

73.33

Show/hide

Query:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE
        MTS+GNTSKALSDIGKRPNTR+ SRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKEN  IDEH S SERS+EE+P PNIMS+MVTD+DTSEDRM +LE
Subjt:  MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELE

Query:  KKKKLLRSSVVGSSVSLPLL
        KK  +L  +V      + LL
Subjt:  KKKKLLRSSVVGSSVSLPLL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACGTCCAGAGGCAACACTTCCAAAGCTCTAAGCGACATCGGTAAAAGGCCAAATACTCGCAACTGCTCAAGAGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGA
GGTCGCAAAGAATATTTGGGAAGAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAGGAAAATCTTGTGATTGATGAGCACGGTTCGTCCTCTGAACGCTCAAGTG
AGGAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATATTGATACAAGTGAAGATAGAATGGCGGAGCTTGAAAAGAAGAAAAAACTTCTGCGTTCGTCTGTT
GTTGGTTCATCCGTATCACTCCCTCTTCTTCATGGGGAACGTGGGAGAACCACCCACGTTCCCTATTAG

mRNA sequence

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Protein sequence

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MTSRGNTSKALSDIGKRPNTRNCSREAQSSEDMPPFEVAKNIWEELSKPPKGGIIIKENLVIDEHGSSSERSSEEMPHPNIMSVMVTDIDTSEDRMAELEKKKKLLRSSV
VGSSVSLPLLHGERGRTTHVPY

PI0013523 (gene) of Melon (PI 482460) v1 genome