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PI0013544 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013544
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr05:9909089..9910522
RNA-Seq ExpressionPI0013544
SyntenyPI0013544
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031700.1 hypothetical protein E6C27_scaffold139G004840 [Cucumis melo var. makuwa]1.4e-1236.17Show/hide
Query:  MLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLGDTASEGATQA--
        M++Y I  K  VNLG +I  SILSWM+ P+G MPF S +EA+C+K VP L   +   I G + +Q +LN+ IT H +KE ER  KTL     E    +  
Subjt:  MLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLGDTASEGATQA--

Query:  -----DHKRKAPAAVSTSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHI
               ++KA    S+S+ K K+ K DA   P+PL I+  +                   LP    P P  QP P  S  H P  H+
Subjt:  -----DHKRKAPAAVSTSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHI

KAA0050752.1 hypothetical protein E6C27_scaffold46449G00010 [Cucumis melo var. makuwa]3.6e-1347.06Show/hide
Query:  DSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLGDTA
        D+TI L  AM++YCI  K  VNLG +I  SILS M+APK  MPF   ++A+C+K VP L T +   I   +C+Q++LN+ IT H +KE +R  KTL    
Subjt:  DSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLGDTA

Query:  SE
         E
Subjt:  SE

KAA0053237.1 hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa]2.1e-1330.09Show/hide
Query:  NLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLG-DTASEGATQADHKRKAPAAV---
        NLG +I  +I +WM  PKGA  F S++E + +K +P L  +    IP  + NQ +LNR+ITFH +KE E   KTLG +   EG    + K   P ++   
Subjt:  NLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLG-DTASEGATQADHKRKAPAAV---

Query:  ----STSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHILSPIHAPNLSPRPRTPPPTKTTT
            STS    KK KVDA  Q                    + ++++     +H   + S     ++       P++  P+   NL P+ +TPP      
Subjt:  ----STSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHILSPIHAPNLSPRPRTPPPTKTTT

Query:  PILSNLPNDSPTVATEAVEVPPPTIHLEDPPVRTS-PILILSEED--ANPETGVSPPPLPDLDIGNHVDDLHIKDPTPILNDAGETASSV-HTTNVQLNN
        P+L       P V      VP   I L     + S PI++LSE D   N    V+ P   +  +  +VDD   K      N AG T+SS+    +++ + 
Subjt:  PILSNLPNDSPTVATEAVEVPPPTIHLEDPPVRTS-PILILSEED--ANPETGVSPPPLPDLDIGNHVDDLHIKDPTPILNDAGETASSV-HTTNVQLNN

Query:  APMEEEDLGDLLGSLVCKPVFDYFDQVLAYQVDQATQLQALKSLVDQLQ
           E ++L DL+G+ +CKP FDYF+QVL  Q   +     + +++D++Q
Subjt:  APMEEEDLGDLLGSLVCKPVFDYFDQVLAYQVDQATQLQALKSLVDQLQ

KAA0057279.1 hypothetical protein E6C27_scaffold280G001200 [Cucumis melo var. makuwa]1.4e-1235.32Show/hide
Query:  PTR-DSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTL
        PTR D+TI LE AM++YCI  K  VNLG +I  SILS M APK  MPF   ++A+C+K VP L T     I   +C Q +LN+ I  H +KE ER  KTL
Subjt:  PTR-DSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTL

Query:  GDTASEGATQAD-----HKRKAPAAVSTSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHIL
             E    +       ++K+  +V + Q K K+ +      P+PL I          +P  +    + S+     SP    QP P   P H+ + H++
Subjt:  GDTASEGATQAD-----HKRKAPAAVSTSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHIL

Query:  S
        +
Subjt:  S

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]4.7e-1349.4Show/hide
Query:  MWLFFIKKKIFPT-RDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIP
        +W+FF K KIFPT  DSTI+++  ++LYCIM KK +NL ++I  +IL+WM  PK AMPF S++E +C+K +P L      +IP
Subjt:  MWLFFIKKKIFPT-RDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIP

TrEMBL top hitse value%identityAlignment
A0A5A7SLS8 Uncharacterized protein6.6e-1336.17Show/hide
Query:  MLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLGDTASEGATQA--
        M++Y I  K  VNLG +I  SILSWM+ P+G MPF S +EA+C+K VP L   +   I G + +Q +LN+ IT H +KE ER  KTL     E    +  
Subjt:  MLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLGDTASEGATQA--

Query:  -----DHKRKAPAAVSTSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHI
               ++KA    S+S+ K K+ K DA   P+PL I+  +                   LP    P P  QP P  S  H P  H+
Subjt:  -----DHKRKAPAAVSTSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHI

A0A5A7U4J2 Uncharacterized protein1.7e-1347.06Show/hide
Query:  DSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLGDTA
        D+TI L  AM++YCI  K  VNLG +I  SILS M+APK  MPF   ++A+C+K VP L T +   I   +C+Q++LN+ IT H +KE +R  KTL    
Subjt:  DSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLGDTA

Query:  SE
         E
Subjt:  SE

A0A5A7UFG4 Uncharacterized protein1.0e-1330.09Show/hide
Query:  NLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLG-DTASEGATQADHKRKAPAAV---
        NLG +I  +I +WM  PKGA  F S++E + +K +P L  +    IP  + NQ +LNR+ITFH +KE E   KTLG +   EG    + K   P ++   
Subjt:  NLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTLG-DTASEGATQADHKRKAPAAV---

Query:  ----STSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHILSPIHAPNLSPRPRTPPPTKTTT
            STS    KK KVDA  Q                    + ++++     +H   + S     ++       P++  P+   NL P+ +TPP      
Subjt:  ----STSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHILSPIHAPNLSPRPRTPPPTKTTT

Query:  PILSNLPNDSPTVATEAVEVPPPTIHLEDPPVRTS-PILILSEED--ANPETGVSPPPLPDLDIGNHVDDLHIKDPTPILNDAGETASSV-HTTNVQLNN
        P+L       P V      VP   I L     + S PI++LSE D   N    V+ P   +  +  +VDD   K      N AG T+SS+    +++ + 
Subjt:  PILSNLPNDSPTVATEAVEVPPPTIHLEDPPVRTS-PILILSEED--ANPETGVSPPPLPDLDIGNHVDDLHIKDPTPILNDAGETASSV-HTTNVQLNN

Query:  APMEEEDLGDLLGSLVCKPVFDYFDQVLAYQVDQATQLQALKSLVDQLQ
           E ++L DL+G+ +CKP FDYF+QVL  Q   +     + +++D++Q
Subjt:  APMEEEDLGDLLGSLVCKPVFDYFDQVLAYQVDQATQLQALKSLVDQLQ

A0A5A7UUR1 Uncharacterized protein6.6e-1335.32Show/hide
Query:  PTR-DSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTL
        PTR D+TI LE AM++YCI  K  VNLG +I  SILS M APK  MPF   ++A+C+K VP L T     I   +C Q +LN+ I  H +KE ER  KTL
Subjt:  PTR-DSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTL

Query:  GDTASEGATQAD-----HKRKAPAAVSTSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHIL
             E    +       ++K+  +V + Q K K+ +      P+PL I          +P  +    + S+     SP    QP P   P H+ + H++
Subjt:  GDTASEGATQAD-----HKRKAPAAVSTSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHIL

Query:  S
        +
Subjt:  S

A0A5A7V6M5 Gag/pol protein2.3e-1349.4Show/hide
Query:  MWLFFIKKKIFPT-RDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIP
        +W+FF K KIFPT  DSTI+++  ++LYCIM KK +NL ++I  +IL+WM  PK AMPF S++E +C+K +P L      +IP
Subjt:  MWLFFIKKKIFPT-RDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCTCTTCTTCATAAAAAAGAAGATATTTCCTACGCGGGATAGCACAATCAACTTAGAGTCAGCGATGCTGCTCTACTGCATAATGACGAAGAAGCGCGTCAACCT
GGGCGATCTAATAGCTACATCCATCTTGTCTTGGATGCGAGCTCCCAAGGGCGCCATGCCCTTCCTATCTATAGTTGAAGCCATCTGCGTAAAGGTCGTGCCTTTTCTAT
GCACCATGAACACAATGTCAATTCCAGGCGACCTATGTAATCAGATATCTTTGAATCGCATGATCACCTTCCATGCCCACAAAGAAATGGAAAGGCGGTCAAAGACATTG
GGTGACACAGCAAGTGAAGGCGCAACTCAGGCAGATCACAAACGAAAAGCCCCAGCTGCCGTATCAACTTCTCAACCAAAAGTTAAAAAACCAAAAGTTGATGCGGCGAG
CCAACCCCAGCCACTTAAAATCATTCACCCATCTTTCTGCGCAGTCAAAAGAATTCCCTCTAAAATACAAAGAGATTCCAGCCACTCTCAACTGCCTAGCCACTCTTCGC
CTATTCCATCACGTCAACCTTCACCCATCATATCCCCCTATCATTCACCTCTCCCCCACATTTTATCACCCATCCACGCACCCAACCTATCTCCCCGCCCTCGTACCCCT
CCGCCCACAAAAACAACAACTCCCATCCTTTCCAACCTTCCCAATGACTCACCCACGGTTGCCACTGAAGCTGTTGAGGTACCCCCACCTACCATCCACCTGGAAGACCC
TCCAGTGCGAACCTCTCCAATTCTTATTCTTTCCGAAGAGGACGCCAACCCTGAAACTGGGGTTTCTCCACCACCACTGCCTGATTTGGATATCGGCAACCATGTTGATG
ACCTACACATTAAGGACCCAACACCTATCCTTAATGATGCTGGCGAGACAGCCTCATCGGTGCACACCACCAACGTTCAACTTAACAACGCGCCGATGGAAGAAGAAGAT
TTGGGCGATTTGTTAGGATCGCTTGTGTGTAAGCCAGTTTTTGATTATTTTGATCAAGTCCTGGCTTATCAAGTTGATCAAGCGACGCAACTCCAAGCCTTGAAGTCCTT
AGTTGATCAGTTGCAACGCCCTGCCTCCGAAACCCTTGTGAAGCCTGCCTCTCAAGAAGAAGTCAATGATCTAAAGCGCGAGCTGAAGGATCTTTCGGCACATAATGCCC
AACTCTCAACCGCCGTATCCAAACTCACATCCTTGGTCATTGCGCAATCGGAGATGATGAGGCAGATAGCTGCACGGCATGATCGGCAATTTCGCACGCAGATGGAGTAC
ACTTACGCGGCCCTTGTTCCACACGTGCCCGCACCGATCAGACCACCAAATCTAGAAACACCCTTTCCGCCGCTTACGCGTCTTGGCGATCTTGAACCCCGCCAAGATAA
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCTCTTCTTCATAAAAAAGAAGATATTTCCTACGCGGGATAGCACAATCAACTTAGAGTCAGCGATGCTGCTCTACTGCATAATGACGAAGAAGCGCGTCAACCT
GGGCGATCTAATAGCTACATCCATCTTGTCTTGGATGCGAGCTCCCAAGGGCGCCATGCCCTTCCTATCTATAGTTGAAGCCATCTGCGTAAAGGTCGTGCCTTTTCTAT
GCACCATGAACACAATGTCAATTCCAGGCGACCTATGTAATCAGATATCTTTGAATCGCATGATCACCTTCCATGCCCACAAAGAAATGGAAAGGCGGTCAAAGACATTG
GGTGACACAGCAAGTGAAGGCGCAACTCAGGCAGATCACAAACGAAAAGCCCCAGCTGCCGTATCAACTTCTCAACCAAAAGTTAAAAAACCAAAAGTTGATGCGGCGAG
CCAACCCCAGCCACTTAAAATCATTCACCCATCTTTCTGCGCAGTCAAAAGAATTCCCTCTAAAATACAAAGAGATTCCAGCCACTCTCAACTGCCTAGCCACTCTTCGC
CTATTCCATCACGTCAACCTTCACCCATCATATCCCCCTATCATTCACCTCTCCCCCACATTTTATCACCCATCCACGCACCCAACCTATCTCCCCGCCCTCGTACCCCT
CCGCCCACAAAAACAACAACTCCCATCCTTTCCAACCTTCCCAATGACTCACCCACGGTTGCCACTGAAGCTGTTGAGGTACCCCCACCTACCATCCACCTGGAAGACCC
TCCAGTGCGAACCTCTCCAATTCTTATTCTTTCCGAAGAGGACGCCAACCCTGAAACTGGGGTTTCTCCACCACCACTGCCTGATTTGGATATCGGCAACCATGTTGATG
ACCTACACATTAAGGACCCAACACCTATCCTTAATGATGCTGGCGAGACAGCCTCATCGGTGCACACCACCAACGTTCAACTTAACAACGCGCCGATGGAAGAAGAAGAT
TTGGGCGATTTGTTAGGATCGCTTGTGTGTAAGCCAGTTTTTGATTATTTTGATCAAGTCCTGGCTTATCAAGTTGATCAAGCGACGCAACTCCAAGCCTTGAAGTCCTT
AGTTGATCAGTTGCAACGCCCTGCCTCCGAAACCCTTGTGAAGCCTGCCTCTCAAGAAGAAGTCAATGATCTAAAGCGCGAGCTGAAGGATCTTTCGGCACATAATGCCC
AACTCTCAACCGCCGTATCCAAACTCACATCCTTGGTCATTGCGCAATCGGAGATGATGAGGCAGATAGCTGCACGGCATGATCGGCAATTTCGCACGCAGATGGAGTAC
ACTTACGCGGCCCTTGTTCCACACGTGCCCGCACCGATCAGACCACCAAATCTAGAAACACCCTTTCCGCCGCTTACGCGTCTTGGCGATCTTGAACCCCGCCAAGATAA
TTAA
Protein sequenceShow/hide protein sequence
MWLFFIKKKIFPTRDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFLSIVEAICVKVVPFLCTMNTMSIPGDLCNQISLNRMITFHAHKEMERRSKTL
GDTASEGATQADHKRKAPAAVSTSQPKVKKPKVDAASQPQPLKIIHPSFCAVKRIPSKIQRDSSHSQLPSHSSPIPSRQPSPIISPYHSPLPHILSPIHAPNLSPRPRTP
PPTKTTTPILSNLPNDSPTVATEAVEVPPPTIHLEDPPVRTSPILILSEEDANPETGVSPPPLPDLDIGNHVDDLHIKDPTPILNDAGETASSVHTTNVQLNNAPMEEED
LGDLLGSLVCKPVFDYFDQVLAYQVDQATQLQALKSLVDQLQRPASETLVKPASQEEVNDLKRELKDLSAHNAQLSTAVSKLTSLVIAQSEMMRQIAARHDRQFRTQMEY
TYAALVPHVPAPIRPPNLETPFPPLTRLGDLEPRQDN