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PI0013553 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013553
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:17139987..17141800
RNA-Seq ExpressionPI0013553
SyntenyPI0013553
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047785.1 putative retrotransposon protein [Cucumis melo var. makuwa]7.3e-2569.07Show/hide
Query:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASKPKPPKEGECYHCKKIEHWKRNCPLYLEELKKNKGSFLSTS
        M+  EKSL +LH MLKT ELNIKSS E LM++KGKNPKKRE+ QG          +KPK PKEGE YHCK+I HWKRNCPLYLEELKKNKGS  STS
Subjt:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASKPKPPKEGECYHCKKIEHWKRNCPLYLEELKKNKGSFLSTS

KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]7.3e-3369.91Show/hide
Query:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEE
        M+ +EKSLT+LH MLKT +LNIK SSEVLMVQKGKNPKKRERDQG G++KVV KASK               PKPPKEGECY CKKIEHW R CP+YLEE
Subjt:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEE

Query:  LKKNKGSFLSTSE
        LKKNKGS  STS+
Subjt:  LKKNKGSFLSTSE

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.7e-2965.22Show/hide
Query:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEE
        M+GM+KSLTELH MLKTI+LNIKSSS+VLM+QKGKNPKK+E DQG G+ KV  K SK               PKPPKEGE YHCKKI +WKRNCPLYL+ 
Subjt:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEE

Query:  LKKNKGSFLSTSEQK
        LKKNK S   TS  K
Subjt:  LKKNKGSFLSTSEQK

TYK07553.1 putative retrotransposon protein [Cucumis melo var. makuwa]4.1e-2873.96Show/hide
Query:  TIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEELKKNKGSFLSTS
        T +LNIKSSSEVLMVQKGKNPKKRERDQG G++KVV KASK               PKPPKEGECY CKKIEHWKR CPLYLEELKKNKGS  STS
Subjt:  TIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEELKKNKGSFLSTS

XP_016901775.1 PREDICTED: uncharacterized protein LOC107991397 [Cucumis melo]3.6e-2460.75Show/hide
Query:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKAS---------------KPKPPKEGECYHCKKIEHWKRNCPLYLEE
        MY M+KSL++LH M K  +LNIKS+ E+LM+QKGKNPK R +DQG G +KVV K S               KPKP KE ECYHCKKI HW+RN PLYLEE
Subjt:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKAS---------------KPKPPKEGECYHCKKIEHWKRNCPLYLEE

Query:  LKKNKGS
        LK NKGS
Subjt:  LKKNKGS

TrEMBL top hitse value%identityAlignment
A0A5A7U2A2 Putative retrotransposon protein3.5e-2569.07Show/hide
Query:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASKPKPPKEGECYHCKKIEHWKRNCPLYLEELKKNKGSFLSTS
        M+  EKSL +LH MLKT ELNIKSS E LM++KGKNPKKRE+ QG          +KPK PKEGE YHCK+I HWKRNCPLYLEELKKNKGS  STS
Subjt:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASKPKPPKEGECYHCKKIEHWKRNCPLYLEELKKNKGSFLSTS

A0A5A7UN47 Uncharacterized protein3.5e-3369.91Show/hide
Query:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEE
        M+ +EKSLT+LH MLKT +LNIK SSEVLMVQKGKNPKKRERDQG G++KVV KASK               PKPPKEGECY CKKIEHW R CP+YLEE
Subjt:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEE

Query:  LKKNKGSFLSTSE
        LKKNKGS  STS+
Subjt:  LKKNKGSFLSTSE

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-2965.22Show/hide
Query:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEE
        M+GM+KSLTELH MLKTI+LNIKSSS+VLM+QKGKNPKK+E DQG G+ KV  K SK               PKPPKEGE YHCKKI +WKRNCPLYL+ 
Subjt:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEE

Query:  LKKNKGSFLSTSEQK
        LKKNK S   TS  K
Subjt:  LKKNKGSFLSTSEQK

A0A5D3C6L2 Putative retrotransposon protein2.0e-2873.96Show/hide
Query:  TIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEELKKNKGSFLSTS
        T +LNIKSSSEVLMVQKGKNPKKRERDQG G++KVV KASK               PKPPKEGECY CKKIEHWKR CPLYLEELKKNKGS  STS
Subjt:  TIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASK---------------PKPPKEGECYHCKKIEHWKRNCPLYLEELKKNKGSFLSTS

A0A5D3CZL7 Putative polyprotein1.7e-2460.75Show/hide
Query:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKAS---------------KPKPPKEGECYHCKKIEHWKRNCPLYLEE
        MY M+KSL++LH M K  +LNIKS+ E+LM+QKGKNPK R +DQG G +KVV K S               KPKP KE ECYHCKKI HW+RN PLYLEE
Subjt:  MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKAS---------------KPKPPKEGECYHCKKIEHWKRNCPLYLEE

Query:  LKKNKGS
        LK NKGS
Subjt:  LKKNKGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGGGATGGAAAAGAGTTTGACTGAGCTGCATAGGATGCTAAAGACTATTGAGTTGAACATCAAGTCTAGTTCTGAGGTTTTGATGGTGCAAAAAGGGAAGAATCC
TAAGAAAAGGGAACGAGATCAAGGAAATGGTAGGGACAAAGTTGTTGCCAAGGCATCAAAACCTAAACCACCCAAGGAAGGAGAATGTTATCACTGCAAGAAAATTGAGC
ATTGGAAGAGGAACTGTCCTCTTTATCTAGAAGAACTGAAGAAAAACAAGGGAAGCTTCCTTTCGACTTCAGAACAAAAAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGTATGGGATGGAAAAGAGTTTGACTGAGCTGCATAGGATGCTAAAGACTATTGAGTTGAACATCAAGTCTAGTTCTGAGGTTTTGATGGTGCAAAAAGGGAAGAATCC
TAAGAAAAGGGAACGAGATCAAGGAAATGGTAGGGACAAAGTTGTTGCCAAGGCATCAAAACCTAAACCACCCAAGGAAGGAGAATGTTATCACTGCAAGAAAATTGAGC
ATTGGAAGAGGAACTGTCCTCTTTATCTAGAAGAACTGAAGAAAAACAAGGGAAGCTTCCTTTCGACTTCAGAACAAAAAACATAA
Protein sequenceShow/hide protein sequence
MYGMEKSLTELHRMLKTIELNIKSSSEVLMVQKGKNPKKRERDQGNGRDKVVAKASKPKPPKEGECYHCKKIEHWKRNCPLYLEELKKNKGSFLSTSEQKT