CuGenDBv2

Gene ID	PI0013637
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	50S ribosomal protein L20
Genome location	chr11:8559375..8562469
RNA-Seq Expression	PI0013637
Synteny	PI0013637
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139908.1 uncharacterized protein LOC101216644 [Cucumis sativus]

3.2e-39

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL            G N     H  M        KVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDAASMIV
Subjt:  ISSNAFPGNKNVVFPPKKDAASMIV

XP_008456292.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo]

1.9e-39

76.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL            G N     H  M        KVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDAASMIV
Subjt:  ISSNAFPGNKNVVFPPKKDAASMIV

XP_022943497.1 uncharacterized protein LOC111448251 [Cucurbita moschata]

5.5e-39

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL            G N     H  M        KVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDA SMIV
Subjt:  ISSNAFPGNKNVVFPPKKDAASMIV

XP_022985864.1 uncharacterized protein LOC111483787 [Cucurbita maxima]

7.1e-39

75.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL            G N     H  M        KVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDA SM+V
Subjt:  ISSNAFPGNKNVVFPPKKDAASMIV

XP_038901625.1 50S ribosomal protein L20 [Benincasa hispida]

1.2e-38

75.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKG+RGRAKNCIRIARERVEK LQYSYRDRRNKKRDMRSL            G N     H  M        KVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDAASMIV
Subjt:  ISSNAFPGNKNVVFPPKKDAASMIV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KD68 50S ribosomal protein L20

1.5e-39

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL            G N     H  M        KVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDAASMIV
Subjt:  ISSNAFPGNKNVVFPPKKDAASMIV

A0A1S4E159 50S ribosomal protein L20

9.1e-40

76.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL            G N     H  M        KVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDAASMIV
Subjt:  ISSNAFPGNKNVVFPPKKDAASMIV

A0A6J1FUI3 50S ribosomal protein L20

2.6e-39

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL            G N     H  M        KVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDA SMIV
Subjt:  ISSNAFPGNKNVVFPPKKDAASMIV

A0A6J1JCG1 50S ribosomal protein L20

3.4e-39

75.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL            G N     H  M        KVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDA SM+V
Subjt:  ISSNAFPGNKNVVFPPKKDAASMIV

A0A6J1KY75 50S ribosomal protein L20

1.9e-37

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL            G N     H  M        KVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKD  S+++
Subjt:  ISSNAFPGNKNVVFPPKKDAASMIV

SwissProt top hits

e value

%identity

Alignment

B6IPJ8 50S ribosomal protein L20

1.7e-14

47.52

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R L            G   S   H           KVLS+++  EP SFKALV+ +  
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSN

Query:  A
        A
Subjt:  A

Q2GHR2 50S ribosomal protein L20

1.8e-13

44.55

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL---GYNASMLAHAFM----------------GKVLSELSMHEPYSFKALVDISSN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSL     NA++  H  +                 KVL++++++    FK +VD+   
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL---GYNASMLAHAFM----------------GKVLSELSMHEPYSFKALVDISSN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L20

4.8e-14

45.54

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL---GYNASMLAHAFM----------------GKVLSELSMHEPYSFKALVDISSN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSL     NA+   H  +                 KVL++++++   +FK +VDI+  
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL---GYNASMLAHAFM----------------GKVLSELSMHEPYSFKALVDISSN

Query:  A
        A
Subjt:  A

Q5FH69 50S ribosomal protein L20

2.8e-14

42.57

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLG-------------------YNASMLAHAFMGKVLSELSMHEPYSFKALVDISSN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSL                    Y  S+       K+L+++++H   +FK +VD++  
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLG-------------------YNASMLAHAFMGKVLSELSMHEPYSFKALVDISSN

Query:  A
        A
Subjt:  A

Q5HC39 50S ribosomal protein L20

2.8e-14

42.57

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLG-------------------YNASMLAHAFMGKVLSELSMHEPYSFKALVDISSN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSL                    Y  S+       K+L+++++H   +FK +VD++  
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLG-------------------YNASMLAHAFMGKVLSELSMHEPYSFKALVDISSN

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

2.1e-33

64.52

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR L            G N     H  M        KVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVD

Query:  ISSNAFPGNKNVVFPPKKDAASMI
        +S  +FPGNKNVV   +K   S I
Subjt:  ISSNAFPGNKNVVFPPKKDAASMI

Sequences

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CDS sequence

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ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAG
GGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGAAAAGTATTATCAGAGCTCTCAATGCACGAACCTT
ACAGTTTCAAGGCCCTGGTAGACATCTCTAGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

mRNA sequence

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Protein sequence

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MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLGYNASMLAHAFMGKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDAASMIV

PI0013637 (gene) of Melon (PI 482460) v1 genome