CuGenDBv2

Gene ID	PI0013676
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr06:24107539..24108541
RNA-Seq Expression	PI0013676
Synteny	PI0013676
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.1e-59

81.33

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Query:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMP F+VAK+IWE++SKPPKGGI+IKENP I+EH S SE S+EE+P PNIMS+MVTDVDTSEDRMAELE
Subjt:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE
        KKVNMLMK VEERD+EIA L+NHIESRDAAESSHT+T KN +KGKAI+QE
Subjt:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE

KAA0036729.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.1e-59

82.67

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Query:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        MT +GNTSKALS+IGKRPNTRSRSR+ QS ED P FEVAK+IWE++SKPPKGGI+IKENP I+EH SS EHS EEMPH NIMSVMVTDVDTSE+RMAELE
Subjt:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE
        KKVNMLMKAVEERDYEIASL+NHIES DAAESSHT+T KN +KGKAI+QE
Subjt:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

2.4e-59

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Query:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMP F+VAK+IWE++SKPPKGGI+IKENP ++EH S SE S+EE+P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE
        KKVNMLMKAVEERD+EIA L+NHIESRDAAESSHT+T KN +KGKAI+QE
Subjt:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.1e-59

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Query:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMP FEV K+IWE++SKPPKGGI+IKENP I+EH S SE S+EE+P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE
        KKVNMLMKAVEE+D+EIA L+NHIESRDAAESSHT+T KN +KGKAI+QE
Subjt:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE

TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

8.2e-60

83.33

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Query:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        MT +GNTSKALS+IGKRPNTRSRSR+ QS ED P FEVAK+IWE++SKPPKGGI+IKENP I+EH SS EHSSEEMPH NIMSVMVTDVDTSE+RMAELE
Subjt:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE
        KKVNMLMKAVEERDYEIASL+NHIES DAAESSHT+T KN DKGK I+QE
Subjt:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKR0 Ty3-gypsy retrotransposon protein

2.0e-59

81.33

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Query:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMP F+VAK+IWE++SKPPKGGI+IKENP I+EH S SE S+EE+P PNIMS+MVTDVDTSEDRMAELE
Subjt:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE
        KKVNMLMK VEERD+EIA L+NHIESRDAAESSHT+T KN +KGKAI+QE
Subjt:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE

A0A5A7TZU9 Ribonuclease H

1.2e-59

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Query:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMP F+VAK+IWE++SKPPKGGI+IKENP ++EH S SE S+EE+P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE
        KKVNMLMKAVEERD+EIA L+NHIESRDAAESSHT+T KN +KGKAI+QE
Subjt:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE

A0A5A7U5H1 Ty3-gypsy retrotransposon protein

1.5e-59

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Query:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMP FEV K+IWE++SKPPKGGI+IKENP I+EH S SE S+EE+P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE
        KKVNMLMKAVEE+D+EIA L+NHIESRDAAESSHT+T KN +KGKAI+QE
Subjt:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE

A0A5D3C857 Ty3-gypsy retrotransposon protein

4.0e-60

83.33

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Query:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        MT +GNTSKALS+IGKRPNTRSRSR+ QS ED P FEVAK+IWE++SKPPKGGI+IKENP I+EH SS EHSSEEMPH NIMSVMVTDVDTSE+RMAELE
Subjt:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE
        KKVNMLMKAVEERDYEIASL+NHIES DAAESSHT+T KN DKGK I+QE
Subjt:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE

A0A5D3CSH0 Ty3-gypsy retrotransposon protein

2.0e-59

82.67

Show/hide

Query:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMP FEVAK+IWE++SKPPKGGI+IKEN  I+EH SSS+ SSEEMPHPNIMSVMVT+VDTSE+RMAELE
Subjt:  MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE
        KKVNMLMK VEERDYEIA L+NHIESRDAAESSH +T KN DKGKA++QE
Subjt:  KKVNMLMKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACATTCAGAGGCAACACTTCCAAAGCTCTAAGCAACATCGGAAAGAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACTCTTTGA
GGTCGCAAAAAGTATCTGGGAAGAATTGTCAAAACCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGAGGAGCACGGTTCGTCTTCTGAACACTCAAGTG
AGGAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATGTCGATACAAGTGAAGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCATGAAAGCGGTT
GAAGAAAGGGATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGGCAAT
TTTGCAGGAAATCTTGTATAAGAACTAA

mRNA sequence

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Protein sequence

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MTFRGNTSKALSNIGKRPNTRSRSREAQSSEDMPLFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAV
EERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQEILYKN

PI0013676 (gene) of Melon (PI 482460) v1 genome