; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0013707 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013707
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag protease polyprotein
Genome locationchr10:2209692..2210383
RNA-Seq ExpressionPI0013707
SyntenyPI0013707
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031931.1 pol protein [Cucumis melo var. makuwa]1.8e-4355.03Show/hide
Query:  VEERGRTNLMSSLWNKLPTPLHPSPMRISLSCQISWRKGLETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLS
        +E+R R  +M     + PTP  P+P                  A       AP   P APQ +PD+LSA+AKHLRDFRKY    FDGSLEDPT+A+LWLS
Subjt:  VEERGRTNLMSSLWNKLPTPLHPSPMRISLSCQISWRKGLETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLS

Query:  FVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQFKKNFYTKFFSTSLKDVKR
         +ETIFRYM+C E+QKVQCAVF+L +RG  WW++TE MLGGDV+QITW QFK++FY KFFS SL+D KR
Subjt:  FVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQFKKNFYTKFFSTSLKDVKR

KAA0035480.1 pol protein [Cucumis melo var. makuwa]4.0e-4371.19Show/hide
Query:  APTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQF
        AP   P APQ +PD+LSA+AKHLRDFRKY    FDGSLEDPT+A+LWLS +ETIFRYM+C E+QKVQCAVF+L +RG  WW++TE MLGGDV+QITW QF
Subjt:  APTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQF

Query:  KKNFYTKFFSTSLKDVKR
        K++FY KFFSTSL+D KR
Subjt:  KKNFYTKFFSTSLKDVKR

KAA0039169.1 pol protein [Cucumis melo var. makuwa]1.4e-4372.03Show/hide
Query:  APTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQF
        APT  P APQ +PD+LSA+AKHLRDFRKY    FDGSLEDPT+A+LWLS +ETIFRYM+C E+QKVQCAVF+L +RG VWW++TE MLGGDV+QITW QF
Subjt:  APTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQF

Query:  KKNFYTKFFSTSLKDVKR
        K++FY KFFS SL+D KR
Subjt:  KKNFYTKFFSTSLKDVKR

KAA0057633.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-4371.19Show/hide
Query:  APTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQF
        AP  AP APQ +PD+LSAKAKHLRDFRKY    FDGSLEDPT+A+LWLS +ETIFRYM+C E+QKVQCAVF+L +RG  WW++TE MLGGDV+QITW QF
Subjt:  APTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQF

Query:  KKNFYTKFFSTSLKDVKR
        K++FY KFFS  L+D KR
Subjt:  KKNFYTKFFSTSLKDVKR

XP_008456947.1 PREDICTED: uncharacterized protein LOC103496742 [Cucumis melo]1.1e-4368.99Show/hide
Query:  ETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLG
        E LA+HQLAQ A  Q   A QDLPD+LS +AKHLRDFR Y  Q F+GSLEDP   +LWLS VETIFR+MRC ++QKVQCAVFLLRER  +WWQS E MLG
Subjt:  ETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLG

Query:  GDVNQITWDQFKKNFYTKFFSTSLKDVKR
        G+VNQITWDQFK++FY KF  +SL+D KR
Subjt:  GDVNQITWDQFKKNFYTKFFSTSLKDVKR

TrEMBL top hitse value%identityAlignment
A0A1S3C5M7 uncharacterized protein LOC1034967425.1e-4468.99Show/hide
Query:  ETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLG
        E LA+HQLAQ A  Q   A QDLPD+LS +AKHLRDFR Y  Q F+GSLEDP   +LWLS VETIFR+MRC ++QKVQCAVFLLRER  +WWQS E MLG
Subjt:  ETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLG

Query:  GDVNQITWDQFKKNFYTKFFSTSLKDVKR
        G+VNQITWDQFK++FY KF  +SL+D KR
Subjt:  GDVNQITWDQFKKNFYTKFFSTSLKDVKR

A0A5A7SQU8 Reverse transcriptase8.8e-4455.03Show/hide
Query:  VEERGRTNLMSSLWNKLPTPLHPSPMRISLSCQISWRKGLETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLS
        +E+R R  +M     + PTP  P+P                  A       AP   P APQ +PD+LSA+AKHLRDFRKY    FDGSLEDPT+A+LWLS
Subjt:  VEERGRTNLMSSLWNKLPTPLHPSPMRISLSCQISWRKGLETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLS

Query:  FVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQFKKNFYTKFFSTSLKDVKR
         +ETIFRYM+C E+QKVQCAVF+L +RG  WW++TE MLGGDV+QITW QFK++FY KFFS SL+D KR
Subjt:  FVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQFKKNFYTKFFSTSLKDVKR

A0A5A7TD13 Reverse transcriptase6.7e-4472.03Show/hide
Query:  APTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQF
        APT  P APQ +PD+LSA+AKHLRDFRKY    FDGSLEDPT+A+LWLS +ETIFRYM+C E+QKVQCAVF+L +RG VWW++TE MLGGDV+QITW QF
Subjt:  APTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQF

Query:  KKNFYTKFFSTSLKDVKR
        K++FY KFFS SL+D KR
Subjt:  KKNFYTKFFSTSLKDVKR

A0A5D3BCD2 Gag protease polyprotein5.1e-4468.99Show/hide
Query:  ETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLG
        E LA+HQLAQ A  Q   A QDLPD+LS +AKHLRDFR Y  Q F+GSLEDP   +LWLS VETIFR+MRC ++QKVQCAVFLLRER  +WWQS E MLG
Subjt:  ETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLG

Query:  GDVNQITWDQFKKNFYTKFFSTSLKDVKR
        G+VNQITWDQFK++FY KF  +SL+D KR
Subjt:  GDVNQITWDQFKKNFYTKFFSTSLKDVKR

E5GB72 Ty3-gypsy retrotransposon protein5.1e-4468.99Show/hide
Query:  ETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLG
        E LA+HQLAQ A  Q   A QDLPD+LS +AKHLRDFR Y  Q F+GSLEDP   +LWLS VETIFR+MRC ++QKVQCAVFLLRER  +WWQS E MLG
Subjt:  ETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRKYKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLG

Query:  GDVNQITWDQFKKNFYTKFFSTSLKDVKR
        G+VNQITWDQFK++FY KF  +SL+D KR
Subjt:  GDVNQITWDQFKKNFYTKFFSTSLKDVKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAATGCGGTCCTTTGTCACTCGCCAGGTTTAGTGGTGAACTTAGGAAAATGTCGCCACGTAGAGGTGCACGAAGGAGTGGTCAAGGGGGTAGAGGAGCGAGGCAG
AACCAACCTGATGAGCAGCCTGTGGAACAAGCTGCCAACCCCGTTGCACCCATCACCCATGCGGATCTCACTATCATGTCAAATCAGTTGGAGAAAAGGTTTAGAGACAT
TAGCACAACACCAGCTAGCACAAACAGCCCCTACTCAAGCTCCAGCTGCACCACAAGACTTGCCGGATAAGCTATCAGCTAAGGCTAAGCATCTGCGAGATTTCAGAAAG
TACAAACTGCAAAACTTTGATGGATCTCTGGAAGATCCCACCAAGGCGGAGCTGTGGTTATCTTTTGTGGAGACCATCTTCCGTTATATGAGGTGTCTTGAAAACCAAAA
GGTGCAGTGCGCGGTGTTCCTGCTTAGAGAGAGAGGTGTTGTATGGTGGCAATCAACAGAGCTAATGCTTGGTGGAGATGTGAACCAGATTACTTGGGACCAGTTCAAGA
AAAACTTTTACACCAAGTTTTTCTCTACTAGTCTAAAGGATGTCAAGCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTAATGCGGTCCTTTGTCACTCGCCAGGTTTAGTGGTGAACTTAGGAAAATGTCGCCACGTAGAGGTGCACGAAGGAGTGGTCAAGGGGGTAGAGGAGCGAGGCAG
AACCAACCTGATGAGCAGCCTGTGGAACAAGCTGCCAACCCCGTTGCACCCATCACCCATGCGGATCTCACTATCATGTCAAATCAGTTGGAGAAAAGGTTTAGAGACAT
TAGCACAACACCAGCTAGCACAAACAGCCCCTACTCAAGCTCCAGCTGCACCACAAGACTTGCCGGATAAGCTATCAGCTAAGGCTAAGCATCTGCGAGATTTCAGAAAG
TACAAACTGCAAAACTTTGATGGATCTCTGGAAGATCCCACCAAGGCGGAGCTGTGGTTATCTTTTGTGGAGACCATCTTCCGTTATATGAGGTGTCTTGAAAACCAAAA
GGTGCAGTGCGCGGTGTTCCTGCTTAGAGAGAGAGGTGTTGTATGGTGGCAATCAACAGAGCTAATGCTTGGTGGAGATGTGAACCAGATTACTTGGGACCAGTTCAAGA
AAAACTTTTACACCAAGTTTTTCTCTACTAGTCTAAAGGATGTCAAGCGTTAG
Protein sequenceShow/hide protein sequence
MANAVLCHSPGLVVNLGKCRHVEVHEGVVKGVEERGRTNLMSSLWNKLPTPLHPSPMRISLSCQISWRKGLETLAQHQLAQTAPTQAPAAPQDLPDKLSAKAKHLRDFRK
YKLQNFDGSLEDPTKAELWLSFVETIFRYMRCLENQKVQCAVFLLRERGVVWWQSTELMLGGDVNQITWDQFKKNFYTKFFSTSLKDVKR