CuGenDBv2

Gene ID	PI0013770
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr12:6973702..6974202
RNA-Seq Expression	PI0013770
Synteny	PI0013770
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036563.1 retrotransposon protein [Cucumis melo var. makuwa]

5.5e-62

71.6

Show/hide

Query:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF
        MD++ +  I T+FT++Q ++L+ LE+L+ND KR+T T  D RH+IRQLAYFR+IHESDLVC+QSTRMDRRTFAILCHLLRTV  L+STE+VDVEEMVAMF
Subjt:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE
        LHVLAHDVKNRV+QREFVRSGET+S HFN+VL+AVVRL+++LIK+P  ++NNC D RW+CFE
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE

KAA0043030.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-62

74.07

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Query:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF
        MD++ +   LT FTM+Q ++L++LE L+ND KRL QT YD RH+IRQLAYFR+IHESDLVC++STRMDRRTF ILCHLLRTV GL+STE+VDVEEMVAMF
Subjt:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE
        LHVLAHDVKNRV+QREFVRSGET+SRHFNIVL  VVRL++ELIK+   I+NNC D RW+CFE
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

3.6e-61

72.22

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Query:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF
        MD   +++I+  F  SQ +LL++LE+L ND KR+T   Y+ RH+IRQLAYFR+IH SDLVC+QSTRMDRR FAILCHLLRT+ GL STEVVDVEEMVAMF
Subjt:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLHDEL+KKPQ + N CTD RWR FE
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE

KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]

3.6e-61

70.99

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Query:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF
        MD + +  +LT FT +Q ++L+ LE+L+N+ KRL  T  D RH+IR+LAYFR+IHESDLVC+QSTRMDRRTFAILCHLLR V GL+STE+VDVEEMVAMF
Subjt:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE
        LHVLAHDVKNRV+QREFVRSGET+SRHFNIVL+AV+RL++ELIK+P  +++NC D RW+CFE
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]

5.5e-62

72.22

Show/hide

Query:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF
        MD   +++I+  F  SQ +LL++LE+L ND KR+T   Y+ RH+IRQLAYFR+IH SDLVC+QSTRMDRR FAILCHLLRT+ GL STEVVDVEEMVAMF
Subjt:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLH+EL+KKPQ + N CTD RWRCFE
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

1.7e-61

72.22

Show/hide

Query:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF
        MD   +++I+  F  SQ +LL++LE+L ND KR+T   Y+ RH+IRQLAYFR+IH SDLVC+QSTRMDRR FAILCHLLRT+ GL STEVVDVEEMVAMF
Subjt:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLHDEL+KKPQ + N CTD RWR FE
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE

A0A5A7T0Z8 Retrotransposon protein

2.7e-62

71.6

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Query:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF
        MD++ +  I T+FT++Q ++L+ LE+L+ND KR+T T  D RH+IRQLAYFR+IHESDLVC+QSTRMDRRTFAILCHLLRTV  L+STE+VDVEEMVAMF
Subjt:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE
        LHVLAHDVKNRV+QREFVRSGET+S HFN+VL+AVVRL+++LIK+P  ++NNC D RW+CFE
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE

A0A5A7TI78 Retrotransposon protein

9.1e-63

74.07

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Query:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF
        MD++ +   LT FTM+Q ++L++LE L+ND KRL QT YD RH+IRQLAYFR+IHESDLVC++STRMDRRTF ILCHLLRTV GL+STE+VDVEEMVAMF
Subjt:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE
        LHVLAHDVKNRV+QREFVRSGET+SRHFNIVL  VVRL++ELIK+   I+NNC D RW+CFE
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE

A0A5A7TXW1 Retrotransposon protein

1.7e-61

72.22

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Query:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF
        MD   +++I+  F  SQ +LL++LE+L ND KR+T   Y+ RH+IRQLAYFR+IH SDLVC+QSTRMDRR FAILCHLLRT+ GL STEVVDVEEMVAMF
Subjt:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLHDEL+KKPQ + N CTD RWR FE
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE

A0A5A7VG29 Retrotransposon protein

2.7e-62

72.22

Show/hide

Query:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF
        MD   +++I+  F  SQ +LL++LE+L ND KR+T   Y+ RH+IRQLAYFR+IH SDLVC+QSTRMDRR FAILCHLLRT+ GL STEVVDVEEMVAMF
Subjt:  MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMF

Query:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE
        LH+LAHDVKNRV+QREF+RSGETISRHFN+VL+AV+RLH+EL+KKPQ + N CTD RWRCFE
Subjt:  LHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G28730.1 unknown protein

6.4e-08

33.64

Show/hide

Query:  IHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIK-----KPQS
        I+ +++ CQ   RM    F  LC +L    GL S+  + ++E VA+FL + A +   R +   F  + ETI R F+ VL A+ RL  E I+     + ++
Subjt:  IHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIK-----KPQS

Query:  ISNNCTD
        ISN   D
Subjt:  ISNNCTD

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

2.5e-12

37.62

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Query:  FRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSIS
        +++++  +  C ++ RMD+  F  LC LL+T   L  T  + +E  +A+FL ++ H+++ R VQ  F  SGETISRHFN VL AV+ +  +   +P S S
Subjt:  FRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSIS

Query:  N
        +
Subjt:  N

Sequences

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CDS sequence

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ATGGATCGGGAAGCAATCTCCAACATTCTGACGATCTTCACTATGTCCCAATGTGAATTGCTAATGGTGTTGGAGATACTTCTAAACGACCGCAAGCGGTTAACGCAAAC
TACGTACGACATTAGACATAAGATTAGACAACTAGCATATTTCCGTTTAATCCATGAGTCCGATCTTGTTTGTCAGCAAAGTACCAGAATGGACAGGCGAACGTTTGCCA
TTCTCTGCCACTTGCTTAGAACGGTCGTTGGGTTAGCCTCGACCGAAGTCGTGGACGTTGAGGAGATGGTGGCGATGTTCCTTCACGTCCTAGCACACGATGTGAAGAAC
CGAGTGGTCCAGCGGGAGTTCGTGCGGTCCGGTGAGACAATTTCAAGGCATTTCAACATTGTGTTGATGGCCGTCGTACGTCTTCACGACGAGCTGATAAAAAAGCCACA
ATCGATATCGAACAACTGCACAGATCCCCGTTGGCGTTGCTTCGAGGTTCGCGTCTTTTAA

mRNA sequence

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Protein sequence

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MDREAISNILTIFTMSQCELLMVLEILLNDRKRLTQTTYDIRHKIRQLAYFRLIHESDLVCQQSTRMDRRTFAILCHLLRTVVGLASTEVVDVEEMVAMFLHVLAHDVKN
RVVQREFVRSGETISRHFNIVLMAVVRLHDELIKKPQSISNNCTDPRWRCFEVRVF

PI0013770 (gene) of Melon (PI 482460) v1 genome