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PI0013772 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013772
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr05:8783485..8784361
RNA-Seq ExpressionPI0013772
SyntenyPI0013772
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060725.1 uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa]7.2e-5160.21Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        ME++RPISCCNV+YKCISKILADRI VWL SF + NQS F   RSI+DNILLC E+VG YH + G PR  +K                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  ----LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS
            L ANL KSS+FVAGV  E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITS IRSWTARVLSF G LQLVRSVL S
Subjt:  ----LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.6e-4550Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSM---FVAGV----------
        ME++RPISCCNV+YKCISKILADR+RVWL SF   NQS F   RSI+DNILLC E+V  YH +SG PRC +K+       S+   F+ GV          
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSM---FVAGV----------

Query:  --------------------------------------------------DSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIR
                                                           +E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITSRIR
Subjt:  --------------------------------------------------DSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIR

Query:  SWTARVLSFAGRLQLVRSVLRS
        SWTA VLSFAGRLQLVRSVLRS
Subjt:  SWTARVLSFAGRLQLVRSVLRS

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]1.8e-4960.43Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK-----------------LIANLG-----
        ME++RPISCCNV+YKCISKILADRI VWL SF + NQS F   RSI+DNILLC E+VG YH + G PR  +K                 L+  +G     
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK-----------------LIANLG-----

Query:  ------KSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS
              KSS+FVAGV  E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITS IRSWTARVLSF G LQLVRSVL S
Subjt:  ------KSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]7.9e-5053.81Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        +ED+ PISCC+V+YKCIS+ILADR+RVWL SF +GNQ  F   RSI+DNILLC E+VG YH   G PRC MK                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  -----------------------LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGR
                               L ANL KS +F+ GV+S  A+ LA + GF++G LPVRYLG+PLLS RL+SSDC PLIQRITSRIRSW+ARVLSFAGR
Subjt:  -----------------------LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGR

Query:  LQLVRSVLRS
        LQLVRSVLRS
Subjt:  LQLVRSVLRS

XP_031745634.1 uncharacterized protein LOC116406053 [Cucumis sativus]2.8e-4761.05Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSMFV-------------AGV
        +ED+ PISCC+V+YKCIS+ILADR+RVWL SF +GNQ  F   RSI+DNILLC E+VG YH   G PRC MK+  +L K+  +V               +
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSMFV-------------AGV

Query:  DSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS
            ++ LA + GF++G LPVRYLG+PLLS RL+SSDC PLIQRITSRIRSW+ARVLSFAGRLQLVRSVLRS
Subjt:  DSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932251.7e-4547.64Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        +ED+RPISCCNV+YKCISKILADR+RVWL SF + NQS F + RSI++NILLC E+VG YH +SG PRC +K                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  ----------------------------------------------LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCA
                                                      L AN  KSS+F+AGV++E A+ LA   GF  G LPVRYLG+PLL+ RL+S+DC 
Subjt:  ----------------------------------------------LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCA

Query:  PLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS
        PLIQRITSRIRS +ARVLSFAGRLQLV SVL S
Subjt:  PLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS

A0A1S4E258 uncharacterized protein LOC1034968808.6e-5060.43Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK-----------------LIANLG-----
        ME++RPISCCNV+YKCISKILADRI VWL SF + NQS F   RSI+DNILLC E+VG YH + G PR  +K                 L+  +G     
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK-----------------LIANLG-----

Query:  ------KSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS
              KSS+FVAGV  E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITS IRSWTARVLSF G LQLVRSVL S
Subjt:  ------KSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS

A0A5A7UV01 F17F8.51.3e-4242.8Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        +ED+R ISCCNV+YKCISKILADR+RVWL SF + NQS F   RSI++NILLC E+VG YH +SG PRC +K                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  -----------------------------------------------------------------------------LIANLGKSSMFVAGVDSETATML
                                                                                     L AN  KSS+FVAGV++E A+ L
Subjt:  -----------------------------------------------------------------------------LIANLGKSSMFVAGVDSETATML

Query:  ADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS
        A   GF  G LP+RYLG+PLL+ RL+S+D APLIQRITSRIRSWTARVLSFAGRLQLVR VLRS
Subjt:  ADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS

A0A5A7V4C1 Reverse transcriptase domain-containing protein3.5e-5160.21Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        ME++RPISCCNV+YKCISKILADRI VWL SF + NQS F   RSI+DNILLC E+VG YH + G PR  +K                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  ----LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS
            L ANL KSS+FVAGV  E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITS IRSWTARVLSF G LQLVRSVL S
Subjt:  ----LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.3e-4550Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSM---FVAGV----------
        ME++RPISCCNV+YKCISKILADR+RVWL SF   NQS F   RSI+DNILLC E+V  YH +SG PRC +K+       S+   F+ GV          
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSM---FVAGV----------

Query:  --------------------------------------------------DSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIR
                                                           +E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITSRIR
Subjt:  --------------------------------------------------DSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIR

Query:  SWTARVLSFAGRLQLVRSVLRS
        SWTA VLSFAGRLQLVRSVLRS
Subjt:  SWTARVLSFAGRLQLVRSVLRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.8e-1552.63Show/hide
Query:  VAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS
        +AGV       +  S  FA G LPVRYLG+PLL+ ++ +SD  PL+++I  RI  WTAR LSFAGRLQL+ SV+ S
Subjt:  VAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATTATAGGCCTATTTCATGTTGTAATGTGGTCTATAAGTGCATTTCTAAGATTTTGGCTGATAGAATTCGTGTGTGGCTTTCGTCTTTTTTCAATGGTAATCA
GTCCACCTTTTTTGTGGTGAGGAGTATTGTGGATAACATTCTGCTTTGTCATGAGATGGTAGGGGATTACCATGGTTCTTCTGGGATGCCTAGGTGTGCGATGAAGTTGA
TTGCTAATCTAGGGAAGAGCTCTATGTTTGTGGCGGGAGTTGATAGTGAGACTGCTACTATGTTGGCGGACAGTAAGGGGTTTGCTCTGGGTACTCTGCCTGTTCGTTAC
CTGGGTATTCCCTTACTCTCTTGTCGGCTACAGTCTTCGGATTGTGCTCCGCTCATCCAACGTATTACTAGTCGGATTCGGTCTTGGACGGCTAGAGTATTGTCCTTCGC
TGGTAGACTTCAGCTTGTGCGTTCGGTGTTGCGAAGTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATTATAGGCCTATTTCATGTTGTAATGTGGTCTATAAGTGCATTTCTAAGATTTTGGCTGATAGAATTCGTGTGTGGCTTTCGTCTTTTTTCAATGGTAATCA
GTCCACCTTTTTTGTGGTGAGGAGTATTGTGGATAACATTCTGCTTTGTCATGAGATGGTAGGGGATTACCATGGTTCTTCTGGGATGCCTAGGTGTGCGATGAAGTTGA
TTGCTAATCTAGGGAAGAGCTCTATGTTTGTGGCGGGAGTTGATAGTGAGACTGCTACTATGTTGGCGGACAGTAAGGGGTTTGCTCTGGGTACTCTGCCTGTTCGTTAC
CTGGGTATTCCCTTACTCTCTTGTCGGCTACAGTCTTCGGATTGTGCTCCGCTCATCCAACGTATTACTAGTCGGATTCGGTCTTGGACGGCTAGAGTATTGTCCTTCGC
TGGTAGACTTCAGCTTGTGCGTTCGGTGTTGCGAAGTTTTTAG
Protein sequenceShow/hide protein sequence
MEDYRPISCCNVVYKCISKILADRIRVWLSSFFNGNQSTFFVVRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRY
LGIPLLSCRLQSSDCAPLIQRITSRIRSWTARVLSFAGRLQLVRSVLRSF