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PI0013773 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013773
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr03:21280430..21280660
RNA-Seq ExpressionPI0013773
SyntenyPI0013773
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045218.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-2376.32Show/hide
Query:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC
        +QRN+V RP I L+Q+ ED+DVEEILA+RVR+GRRP RRIHE+L+K KNLPVE+TSWERVEDLEAWKQKIE+F+LC
Subjt:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC

KAA0054053.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2376.32Show/hide
Query:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC
        +QRN+V RP I L+Q+ ED+DVEEILA+RVR+GRRP RRIHE+LVK KNLP+E+TSWERVEDLEAWKQKIE+F+LC
Subjt:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC

KAA0057858.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-2378.67Show/hide
Query:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQL
        +QRN+V RP I L+Q+ ED+DVEEILA+RVR+GRRPTRRIHE+LVK KNLPVE+TSWERVEDLEAWKQKIE+F+L
Subjt:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQL

RRQ65156.1 hypothetical protein CQW39_37580 [Streptomyces griseofuscus]6.1e-2478.95Show/hide
Query:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC
        +QRNVV RP I L+Q+ ED+DVEEILA+RVR+GRRP RRIHE+LVK KNLPVE+TSWERVEDLEAWKQKIE+F+LC
Subjt:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC

WP_148103103.1 hypothetical protein, partial [Streptomyces griseofuscus]6.1e-2478.95Show/hide
Query:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC
        +QRNVV RP I L+Q+ ED+DVEEILA+RVR+GRRP RRIHE+LVK KNLPVE+TSWERVEDLEAWKQKIE+F+LC
Subjt:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC

TrEMBL top hitse value%identityAlignment
A0A5A7TQR5 Reverse transcriptase5.0e-2476.32Show/hide
Query:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC
        +QRN+V RP I L+Q+ ED+DVEEILA+RVR+GRRP RRIHE+L+K KNLPVE+TSWERVEDLEAWKQKIE+F+LC
Subjt:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC

A0A5A7UDJ3 Reverse transcriptase8.5e-2476.32Show/hide
Query:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC
        +QRN+V RP I L+Q+ ED+DVEEILA+RVR+GRRP RRIHE+LVK KNLP+E+TSWERVEDLEAWKQKIE+F+LC
Subjt:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC

A0A5A7URR9 Reverse transcriptase1.5e-2378.67Show/hide
Query:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQL
        +QRN+V RP I L+Q+ ED+DVEEILA+RVR+GRRPTRRIHE+LVK KNLPVE+TSWERVEDLEAWKQKIE+F+L
Subjt:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQL

A0A5D3BFH0 Reverse transcriptase1.5e-2378.67Show/hide
Query:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQL
        +QRN+V RP I L+Q+ ED+DVEEILA+RVR+GRRPTRRIHE+LVK KNLPVE+TSWERVEDLEAWKQKIE+F+L
Subjt:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQL

A0A5D3C4R1 Reverse transcriptase1.9e-2378.67Show/hide
Query:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQL
        +QRNVV RP I L+Q+ ED+DVEEILA+RVR+GRRP RRIHE+LVK KNLPVE+TSWERVEDLEAWKQKIE+F+L
Subjt:  MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACGCAACGTTGTCATTCGGCCAAACATCAGTCTGAACCAAAGGGAAGAAGACAGAGATGTTGAAGAAATTCTTGCCGACCGGGTAAGGAAGGGTAGAAGACCCAC
GAGGAGAATCCATGAATTCCTAGTCAAGTTGAAGAACCTCCCCGTGGAAAAGACCAGTTGGGAACGCGTCGAAGACCTAGAAGCTTGGAAGCAGAAGATCGAAGAATTCC
AGCTTTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAACGCAACGTTGTCATTCGGCCAAACATCAGTCTGAACCAAAGGGAAGAAGACAGAGATGTTGAAGAAATTCTTGCCGACCGGGTAAGGAAGGGTAGAAGACCCAC
GAGGAGAATCCATGAATTCCTAGTCAAGTTGAAGAACCTCCCCGTGGAAAAGACCAGTTGGGAACGCGTCGAAGACCTAGAAGCTTGGAAGCAGAAGATCGAAGAATTCC
AGCTTTGCTAG
Protein sequenceShow/hide protein sequence
MQRNVVIRPNISLNQREEDRDVEEILADRVRKGRRPTRRIHEFLVKLKNLPVEKTSWERVEDLEAWKQKIEEFQLC