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PI0013843 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013843
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPMD domain-containing protein
Genome locationchr04:20005329..20005805
RNA-Seq ExpressionPI0013843
SyntenyPI0013843
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031645.1 hypothetical protein E6C27_scaffold139G004180 [Cucumis melo var. makuwa]9.9e-4581.54Show/hide
Query:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK
        VL GI KIHAD+LTPLEEYLNSYLKRVDNFNDVQSSYSAQLL IDK  QLDEKTSAI+E LTLM+QLR  AKVIQERATQLSLEKKELE +LQSIN ES+
Subjt:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK

Query:  QLSILSCKKNEAIDRKELEVAKLQDEANTL
        QLSIL C+K + ID++ELEV KLQDE NTL
Subjt:  QLSILSCKKNEAIDRKELEVAKLQDEANTL

KAA0046254.1 hypothetical protein E6C27_scaffold284G00570 [Cucumis melo var. makuwa]4.2e-4380Show/hide
Query:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK
        VL GI KIHAD LT LEEYLNSYLKRVDNFNDVQSSYSAQLL +DK  QL+EKTSAIKEALTL+ QLR  AKVIQER  +LSLE+KELE RL+SIN ES+
Subjt:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK

Query:  QLSILSCKKNEAIDRKELEVAKLQDEANTL
        QLSILSC+K EAID++ELEVAKLQDE NTL
Subjt:  QLSILSCKKNEAIDRKELEVAKLQDEANTL

KAA0060431.1 hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa]1.9e-4380.77Show/hide
Query:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK
        VL GI KIH + LTPLEEYLNSYLKRVDNFNDVQSSYSAQLL  DK  QLDEKTSAI+EALTLM++LRE A VIQERA QLSLEKKELE RLQS+N ES+
Subjt:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK

Query:  QLSILSCKKNEAIDRKELEVAKLQDEANTL
        QLSILSC+K EAI ++ELEVAKLQDE NTL
Subjt:  QLSILSCKKNEAIDRKELEVAKLQDEANTL

TYK03767.1 hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa]2.4e-4380.77Show/hide
Query:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK
        VL GI KIHAD LT LEEYLNSYLKRVDNFNDVQSSYSAQLL  DK  QL+EKTSAIKEALTL+ QLR  AKVIQER  +LSLE+KELE RLQSIN ES+
Subjt:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK

Query:  QLSILSCKKNEAIDRKELEVAKLQDEANTL
        QLSILSC+K EAID++ELEVAKLQDE NTL
Subjt:  QLSILSCKKNEAIDRKELEVAKLQDEANTL

TYK16282.1 hypothetical protein E5676_scaffold21G00530 [Cucumis melo var. makuwa]3.4e-4581.68Show/hide
Query:  MVLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTES
        + L GI KIHAD LTPLEEYLNSYLKRVDNFNDVQSSYSAQLL  DK  QLDEKTSAI+EALTLM++LR  AKVIQERATQLSLEKKELE RLQSIN +S
Subjt:  MVLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTES

Query:  KQLSILSCKKNEAIDRKELEVAKLQDEANTL
        +QLSILSC+K EAID++ELEV+KLQDE NTL
Subjt:  KQLSILSCKKNEAIDRKELEVAKLQDEANTL

TrEMBL top hitse value%identityAlignment
A0A5A7TT69 Uncharacterized protein2.0e-4380Show/hide
Query:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK
        VL GI KIHAD LT LEEYLNSYLKRVDNFNDVQSSYSAQLL +DK  QL+EKTSAIKEALTL+ QLR  AKVIQER  +LSLE+KELE RL+SIN ES+
Subjt:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK

Query:  QLSILSCKKNEAIDRKELEVAKLQDEANTL
        QLSILSC+K EAID++ELEVAKLQDE NTL
Subjt:  QLSILSCKKNEAIDRKELEVAKLQDEANTL

A0A5A7V3X5 PMD domain-containing protein9.0e-4480.77Show/hide
Query:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK
        VL GI KIH + LTPLEEYLNSYLKRVDNFNDVQSSYSAQLL  DK  QLDEKTSAI+EALTLM++LRE A VIQERA QLSLEKKELE RLQS+N ES+
Subjt:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK

Query:  QLSILSCKKNEAIDRKELEVAKLQDEANTL
        QLSILSC+K EAI ++ELEVAKLQDE NTL
Subjt:  QLSILSCKKNEAIDRKELEVAKLQDEANTL

A0A5D3BW91 Uncharacterized protein1.2e-4380.77Show/hide
Query:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK
        VL GI KIHAD LT LEEYLNSYLKRVDNFNDVQSSYSAQLL  DK  QL+EKTSAIKEALTL+ QLR  AKVIQER  +LSLE+KELE RLQSIN ES+
Subjt:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK

Query:  QLSILSCKKNEAIDRKELEVAKLQDEANTL
        QLSILSC+K EAID++ELEVAKLQDE NTL
Subjt:  QLSILSCKKNEAIDRKELEVAKLQDEANTL

A0A5D3BZ74 Uncharacterized protein4.8e-4581.54Show/hide
Query:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK
        VL GI KIHAD+LTPLEEYLNSYLKRVDNFNDVQSSYSAQLL IDK  QLDEKTSAI+E LTLM+QLR  AKVIQERATQLSLEKKELE +LQSIN ES+
Subjt:  VLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESK

Query:  QLSILSCKKNEAIDRKELEVAKLQDEANTL
        QLSIL C+K + ID++ELEV KLQDE NTL
Subjt:  QLSILSCKKNEAIDRKELEVAKLQDEANTL

A0A5D3CXM9 Uncharacterized protein1.6e-4581.68Show/hide
Query:  MVLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTES
        + L GI KIHAD LTPLEEYLNSYLKRVDNFNDVQSSYSAQLL  DK  QLDEKTSAI+EALTLM++LR  AKVIQERATQLSLEKKELE RLQSIN +S
Subjt:  MVLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTES

Query:  KQLSILSCKKNEAIDRKELEVAKLQDEANTL
        +QLSILSC+K EAID++ELEV+KLQDE NTL
Subjt:  KQLSILSCKKNEAIDRKELEVAKLQDEANTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCTTTTGGGAATTACAAAGATCCATGCAGACAACCTGACTCCTCTTGAAGAATATTTGAATAGCTACCTTAAGAGGGTAGACAACTTCAATGATGTACAATCTTC
ATATTCTGCACAACTGTTGTTGATAGATAAAACTTGTCAATTGGACGAGAAGACATCTGCCATCAAAGAAGCCTTGACTTTAATGGACCAATTACGAGAAGCTGCCAAAG
TTATTCAAGAGAGGGCTACGCAGTTATCCTTGGAAAAGAAAGAACTGGAGAGCAGACTTCAGAGTATAAATACTGAGTCTAAACAGCTATCCATCTTATCTTGTAAGAAA
AATGAGGCCATAGATAGGAAAGAACTAGAAGTTGCTAAGCTCCAAGACGAAGCTAACACTCTTTGTTGTGTGTCGAAAATTGGTAGTATAGTGGAGAGTAGGGTTGTCGT
AGCCAAGAGAGCAACTTGCAACTTCAAGATGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCTTTTGGGAATTACAAAGATCCATGCAGACAACCTGACTCCTCTTGAAGAATATTTGAATAGCTACCTTAAGAGGGTAGACAACTTCAATGATGTACAATCTTC
ATATTCTGCACAACTGTTGTTGATAGATAAAACTTGTCAATTGGACGAGAAGACATCTGCCATCAAAGAAGCCTTGACTTTAATGGACCAATTACGAGAAGCTGCCAAAG
TTATTCAAGAGAGGGCTACGCAGTTATCCTTGGAAAAGAAAGAACTGGAGAGCAGACTTCAGAGTATAAATACTGAGTCTAAACAGCTATCCATCTTATCTTGTAAGAAA
AATGAGGCCATAGATAGGAAAGAACTAGAAGTTGCTAAGCTCCAAGACGAAGCTAACACTCTTTGTTGTGTGTCGAAAATTGGTAGTATAGTGGAGAGTAGGGTTGTCGT
AGCCAAGAGAGCAACTTGCAACTTCAAGATGAATTAA
Protein sequenceShow/hide protein sequence
MVLLGITKIHADNLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLLIDKTCQLDEKTSAIKEALTLMDQLREAAKVIQERATQLSLEKKELESRLQSINTESKQLSILSCKK
NEAIDRKELEVAKLQDEANTLCCVSKIGSIVESRVVVAKRATCNFKMN