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PI0013852 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0013852
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr10:51591..55911
RNA-Seq ExpressionPI0013852
SyntenyPI0013852
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053200.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.4e-2243.09Show/hide
Query:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLP
        N  + +N NS  +R DD  Y  KK+ D   F CRECGG GHYQ+EC T+ R+Q+K F  TLSDE     DS D+   + A+ +++  + +T DD   S+ 
Subjt:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLP

Query:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG
          + E ++EK    W+ED +    QKERI +L+E+N RL+  IS +K +LR  +NEN+++ KS +MLNSGT++L+ IL +G
Subjt:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG

KAA0060361.1 gag-pol polyprotein, related [Cucumis melo var. makuwa]4.5e-2141.28Show/hide
Query:  RNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLPGGDLE
        RN  +F +R D   Y  KK+ D   F CRECGG GHYQ+EC T+LR Q+K F  TLSDE   S + E  +  L A                         
Subjt:  RNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLPGGDLE

Query:  DIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG
             W+ED +  E QKE+I +L+E+N R +  IS +K +LR  +NEN+++ KSV+MLNSGT++L  IL SG
Subjt:  DIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG

TYJ98791.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.4e-2240.76Show/hide
Query:  NQHKFRNGNSFPKRKDDRN------YAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRAL-VAYSSLQTNNFSTGD
        NQ++ RN +S  KR ++ +      Y  KK+ D   F CRECGG  HYQ+EC T+LR+Q+  F  TLSDES    D +  + A  +  +   TN+ S   
Subjt:  NQHKFRNGNSFPKRKDDRN------YAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRAL-VAYSSLQTNNFSTGD

Query:  DQSSSLPGGDLEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG
        ++S S     +E +   W+ED +    QKERI +L+E+N  L+  IS +K E+R  +NEN+++ KSV+MLNSG ++L  IL SG
Subjt:  DQSSSLPGGDLEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG

TYK00141.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.4e-2243.09Show/hide
Query:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLP
        N  + +N NS  +R DD  Y  KK+ D   F CRECGG GHYQ+EC T+ R+Q+K F  TLSDE     DS D+   + A+ +++  + +T DD   S+ 
Subjt:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLP

Query:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG
          + E ++EK    W+ED +    QKERI +L+E+N RL+  IS +K +LR  +NEN+++ KS +MLNSGT++L+ IL +G
Subjt:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG

TYK02457.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]4.1e-2247.33Show/hide
Query:  FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLPGGD---LEDIMEKWQEDLKVIEQQKERILE
        F CRECGG GHYQ+EC TYLR+Q+K F  TLSD  E S DS D+ R + A++   T+  S  D + S     D   +E     W+ED +    QKERI +
Subjt:  FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLPGGD---LEDIMEKWQEDLKVIEQQKERILE

Query:  LVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG
        L+++N  L+  IS IK +LR  +NEN+++ KSV+MLNSGT++L+ IL SG
Subjt:  LVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG

TrEMBL top hitse value%identityAlignment
A0A5A7UDB5 Gag-pol polyprotein1.2e-2243.09Show/hide
Query:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLP
        N  + +N NS  +R DD  Y  KK+ D   F CRECGG GHYQ+EC T+ R+Q+K F  TLSDE     DS D+   + A+ +++  + +T DD   S+ 
Subjt:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLP

Query:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG
          + E ++EK    W+ED +    QKERI +L+E+N RL+  IS +K +LR  +NEN+++ KS +MLNSGT++L+ IL +G
Subjt:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG

A0A5A7V3Q5 Gag-pol polyprotein, related2.2e-2141.28Show/hide
Query:  RNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLPGGDLE
        RN  +F +R D   Y  KK+ D   F CRECGG GHYQ+EC T+LR Q+K F  TLSDE   S + E  +  L A                         
Subjt:  RNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLPGGDLE

Query:  DIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG
             W+ED +  E QKE+I +L+E+N R +  IS +K +LR  +NEN+++ KSV+MLNSGT++L  IL SG
Subjt:  DIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG

A0A5D3BJA9 Gag-pol polyprotein6.8e-2340.76Show/hide
Query:  NQHKFRNGNSFPKRKDDRN------YAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRAL-VAYSSLQTNNFSTGD
        NQ++ RN +S  KR ++ +      Y  KK+ D   F CRECGG  HYQ+EC T+LR+Q+  F  TLSDES    D +  + A  +  +   TN+ S   
Subjt:  NQHKFRNGNSFPKRKDDRN------YAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRAL-VAYSSLQTNNFSTGD

Query:  DQSSSLPGGDLEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG
        ++S S     +E +   W+ED +    QKERI +L+E+N  L+  IS +K E+R  +NEN+++ KSV+MLNSG ++L  IL SG
Subjt:  DQSSSLPGGDLEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG

A0A5D3BJZ7 Gag-pol polyprotein1.2e-2243.09Show/hide
Query:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLP
        N  + +N NS  +R DD  Y  KK+ D   F CRECGG GHYQ+EC T+ R+Q+K F  TLSDE     DS D+   + A+ +++  + +T DD   S+ 
Subjt:  NQHKFRNGNSFPKRKDDRNYAFKKDED---FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLP

Query:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG
          + E ++EK    W+ED +    QKERI +L+E+N RL+  IS +K +LR  +NEN+++ KS +MLNSGT++L+ IL +G
Subjt:  GGDLEDIMEK----WQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG

A0A5D3BSP9 Gag-proteinase polyprotein2.0e-2247.33Show/hide
Query:  FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLPGGD---LEDIMEKWQEDLKVIEQQKERILE
        F CRECGG GHYQ+EC TYLR+Q+K F  TLSD  E S DS D+ R + A++   T+  S  D + S     D   +E     W+ED +    QKERI +
Subjt:  FICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLPGGD---LEDIMEKWQEDLKVIEQQKERILE

Query:  LVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG
        L+++N  L+  IS IK +LR  +NEN+++ KSV+MLNSGT++L+ IL SG
Subjt:  LVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G05360.1 Zinc knuckle (CCHC-type) family protein5.2e-0726.84Show/hide
Query:  DRNYAFKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQ-----------TNNFSTGDDQSSSLPGGDLEDIM
        ++   +K  +   C EC G  H  SECA  ++ + K F   +  +SE   D  +E++ LVA+++ +           T+  +TG   +S+       D  
Subjt:  DRNYAFKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQ-----------TNNFSTGDDQSSSLPGGDLEDIM

Query:  EKWQEDLKVIEQQ--------KERILELVEDNHRL----LQTISDIKKELRIAKNENNRMS------KSVRMLNSGTKDLNHILSSGCRD
        +   +DL + +++         E  +++VE+N  L    L+  + + K L+ A  +    S      K++RMLN+GTK L HILS G  D
Subjt:  EKWQEDLKVIEQQ--------KERILELVEDNHRL----LQTISDIKKELRIAKNENNRMS------KSVRMLNSGTKDLNHILSSGCRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTATGGATCCACTTCAAATTGGGATAATCAACATAAATTTAGAAATGGTAACTCTTTTCCGAAAAGAAAAGATGACAGAAATTATGCTTTTAAAAAGGATGAAGA
TTTCATATGCAGAGAATGTGGTGGTAAAGGTCATTACCAATCAGAATGTGCTACCTATTTGAGAAGACAGCGTAAAGGATTCTCAGCAACTCTGTCTGATGAATCAGAAT
CAAGTCATGATTCTGAGGATGAGGTACGTGCACTAGTTGCTTATTCTAGTTTACAAACTAATAATTTTTCGACAGGAGATGATCAATCCTCTAGTCTTCCTGGAGGAGAT
CTTGAAGATATCATGGAGAAATGGCAGGAAGATCTCAAAGTTATTGAACAGCAGAAAGAAAGAATTTTAGAACTAGTTGAAGACAACCATAGACTGTTGCAAACTATCTC
AGATATCAAGAAGGAGTTAAGAATTGCAAAAAATGAAAATAATAGAATGTCAAAATCTGTTCGCATGCTGAACTCAGGTACCAAAGATTTAAATCACATTTTGAGTTCAG
GATGTCGTGACACACAGATCAACAGAATGAGGCTCAGAAGACAGATTAAGAAAAATATCACAAATGCAGGTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTATGGATCCACTTCAAATTGGGATAATCAACATAAATTTAGAAATGGTAACTCTTTTCCGAAAAGAAAAGATGACAGAAATTATGCTTTTAAAAAGGATGAAGA
TTTCATATGCAGAGAATGTGGTGGTAAAGGTCATTACCAATCAGAATGTGCTACCTATTTGAGAAGACAGCGTAAAGGATTCTCAGCAACTCTGTCTGATGAATCAGAAT
CAAGTCATGATTCTGAGGATGAGGTACGTGCACTAGTTGCTTATTCTAGTTTACAAACTAATAATTTTTCGACAGGAGATGATCAATCCTCTAGTCTTCCTGGAGGAGAT
CTTGAAGATATCATGGAGAAATGGCAGGAAGATCTCAAAGTTATTGAACAGCAGAAAGAAAGAATTTTAGAACTAGTTGAAGACAACCATAGACTGTTGCAAACTATCTC
AGATATCAAGAAGGAGTTAAGAATTGCAAAAAATGAAAATAATAGAATGTCAAAATCTGTTCGCATGCTGAACTCAGGTACCAAAGATTTAAATCACATTTTGAGTTCAG
GATGTCGTGACACACAGATCAACAGAATGAGGCTCAGAAGACAGATTAAGAAAAATATCACAAATGCAGGTATTTGA
Protein sequenceShow/hide protein sequence
MNYGSTSNWDNQHKFRNGNSFPKRKDDRNYAFKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLSDESESSHDSEDEVRALVAYSSLQTNNFSTGDDQSSSLPGGD
LEDIMEKWQEDLKVIEQQKERILELVEDNHRLLQTISDIKKELRIAKNENNRMSKSVRMLNSGTKDLNHILSSGCRDTQINRMRLRRQIKKNITNAGI